| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,350,675 | Δ1 bp | noncoding (99/121 nt) | arcZ → | sRNA positive antisense regulator of rpoS, binds Hfq |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,350,672 | 0 | C | . | 100.0% | 127.6 / NA | 30 | noncoding (96/121 nt) | arcZ | sRNA positive antisense regulator of rpoS, binds Hfq |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (16/14); total (16/14) | |||||||||||
TCATTTAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCC > NC_000913/3350550‑3350794 | tCATTTAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGt > 2:286598/1‑139 (MQ=255) ttGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGt > 1:502600/1‑139 (MQ=255) tGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTg > 2:57782/1‑139 (MQ=255) tgcgGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCgggg > 1:358999/1‑110 (MQ=255) tgcgGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCgggg < 2:358999/110‑1 (MQ=255) tgcgGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACg > 1:37691/1‑139 (MQ=255) gCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCttt < 1:57782/139‑1 (MQ=255) cTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCa < 2:37691/139‑1 (MQ=255) gTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCAc > 2:292350/1‑139 (MQ=255) tAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCAct < 1:292350/139‑1 (MQ=255) catcatAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACtcttct < 2:502600/139‑1 (MQ=255) atcatAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTgg > 2:54837/1‑88 (MQ=255) atcatAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTgg < 1:54837/88‑1 (MQ=255) tcatAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAg < 1:119348/84‑1 (MQ=255) tcatAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAg > 2:119348/1‑84 (MQ=255) tcatAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCttt > 1:299542/1‑139 (MQ=255) catAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAg < 1:321299/108‑1 (MQ=255) catAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAg > 2:321299/1‑108 (MQ=255) ataataATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCa > 2:14097/1‑139 (MQ=255) taataaTTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCAt < 1:14097/139‑1 (MQ=255) tACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCgggg > 2:399767/1‑62 (MQ=255) tACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCgggg < 1:399767/62‑1 (MQ=255) tACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACCCTTTCAGCACTTCTACGTCGTAACGCCACTCTTCTTCCATCCCTTCaa > 2:516336/1‑139 (MQ=255) cgcAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTa < 1:467400/101‑1 (MQ=255) cgcAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTa > 2:467400/1‑101 (MQ=255) ggTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACtt > 1:85574/1‑80 (MQ=255) ggTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACtt < 2:382262/80‑1 (MQ=255) ggTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACtt > 1:382262/1‑80 (MQ=255) ggTGTTGGCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACtt < 2:85574/80‑1 (MQ=255) ggCGCAGTATTCGCGCA‑CCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGcc < 1:249588/139‑1 (MQ=255) | TCATTTAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAGCCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCC > NC_000913/3350550‑3350794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |