| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,002,224 | (G)7→8 | coding (418/1071 nt) | elfG → | putative fimbrial‑like adhesin protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,002,217 | 1 | . | G | 100.0% | 74.5 / NA | 20 | T137T (ACA→ACG) | elfG | putative fimbrial‑like adhesin protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (11/9); total (11/9) | |||||||||||
GGGCATTCGCCGCGGATTCACCGTTAGTCTATTTAGGCGACAACTGGTACAAAATTAATGACTATCTTGCCGCCAAAGTTTTATTGCAGGTTAAAGGCAGTTCTCCTACTGCGGTTCCTTTCGAAAACGTGGGCACA‑‑GGGGGGGATACCCGATGGCATATTTGCGACCCTGGCGGTCAACGTTTAGGTGGGCAGGGGGCAAGCGGTAATAGCGGTAGCTTTTCCCTGAAAATATTGCAGCCGTTCGTTGGCTCGGTC > NC_000913/1002081‑1002337 | gggCATTCGCCGCGGATTCACCGTTAGTCTATTTAGGCGACAACTGGTACAAAATTAATGACTATCTTGCCGCCAAAGTTTTATTGCAGGTTAAAGGCAGTTCTCCTACTGCGGTTCCTTTCGAAAACGTGGGCACA‑‑gg > 2:413404/1‑139 (MQ=255)gggCATTCGCCGCGGATTCACCGTTAGTCTATTTAGGCGACAACTGGTACAAAATCAATGACTATCTTGCCGCCAAAGTTTTATTGCAGGTTAAAGGCAGTTCTCCTACTGCGGTTCCTTTCGAAAACGTGGGCACA‑‑gg < 2:309090/139‑1 (MQ=255) aaCTGGTACAAAATTAATGACTATCTTGCCGCCAAAGTTTTATTGCAGGTTAAAGGCAGTTCTCCTACTGCGGTTCCTTTCGAAAACGTGGGCACAG‑GGGGGGGATACCCGATGGCATATTTGCGACCCTGGCGGTCaa > 2:152911/1‑139 (MQ=255) tATCTTGCCGCCAAAGTTTTATTGCAGGTTAAAGGCAGTTCTCCTACTGCGGTTCCTTTCGAAAACGTGGGCACAG‑GGGGGGGATACCCGATGGCATATTTGCGACCCTGGCGGTCAACGTTTAGGTGGGCAGGGGGCa > 1:73056/1‑139 (MQ=255) tCTTGCCGCCAAAGTTTTATTGCAGGTTAAAGGCAGTTCTCCTACTGCGGTTCCTTTCGAAAACGTGGGCACAG‑GGGGGGGATACCCGATGGCATATTTGCGACCCTGGCGGTCAACGTTTAGGTGGGCAGGGGGCAAg > 1:314263/1‑139 (MQ=255) ccgccAAAGTTTTATTGCAGGTTAAAGGCAGTTCTCCTACTGCGGTTCCTTTCGAAAACGTGGGCACAG‑GGGGGGGATACCCGATGGCATATTTGCGACCCTGGCGGTCAACGTTTAGGTGGGCAGGGGGCAAGCGGTa < 1:413404/139‑1 (MQ=255) gccAAAGTTTTATTGCAGGTTAAAGGCAGTTCTCCTACTGCGGTTCCTTTCGAAAACGTGGGCACAG‑GGGGGGGATACCCGATGGCATATTTGCGACCCTGGCGGt > 1:23698/1‑106 (MQ=255) gccAAAGTTTTATTGCAGGTTAAAGGCAGTTCTCCTACTGCGGTTCCTTTCGAAAACGTGGGCACAG‑GGGGGGGATACCCGATGGCATATTTGCGACCCTGGCGGt < 2:23698/106‑1 (MQ=255) aaaGGCAGTTCTCCTACTGCGGTTCCTTTCGAAAACGTGGGCACAG‑GGGGGGGATACCCGATGGCATATTTGCGACCCTGGCGGTCAACGTTTAGGTGGGCAGGGGGCAAGCGGTAATAGCGGTAGCTTTTCCCTGaaa < 2:73056/139‑1 (MQ=255) gTTCTCCTACTGCGGTTCCTTTCGAAAACGTGGGCACAG‑GGGGGGGATACCCGATGGCATATTTGCGACCCTGGCGGt < 2:136973/78‑1 (MQ=255) gTTCTCCTACTGCGGTTCCTTTCGAAAACGTGGGCACAG‑GGGGGGGATACCCGATGGCATATTTGCGACCCTGGCGGt > 1:136973/1‑78 (MQ=255) gTTCTCCTACTGCGGTTCCTTTCGAAAACGTGGGCACAG‑GGGGGGGATACCCGATGGCATATTTGCGACCCTGGCGGTCAACGTTTAGGTGGGCAGGGGGCa < 2:281023/102‑1 (MQ=255) gTTCTCCTACTGCGGTTCCTTTCGAAAACGTGGGCACAG‑GGGGGGGATACCCGATGGCATATTTGCGACCCTGGCGGTCAACGTTTAGGTGGGCAGGGGGCa > 1:281023/1‑102 (MQ=255) gTTCTCCTACTGCGGTTCCTTTCGAAAACGTGGGCACAG‑GGGGGGGATACCCGATGGCATATTTGCGACCCTGGCGGTCAACGTTTAGGTGGGCAGGGGGCAAGCGGTAATAGCGGTAGCTTTTCCCTGAAAATATTGc > 1:497521/1‑139 (MQ=255) gCGGTTCCTTTCGAAAACGTGGGCACAGGGGGGGGGATACCCGATGGCATATTTGCGACCCTGGCGGTCAACGTTTAGGTGGGCAGGGGGCAAGCGGTAATAGCGGTAGCTTTTCCCTGAAAATATTGCAGCcgttcgt > 2:106014/1‑139 (MQ=255) gCGGTTCCTTTCGAAAACGTGGGCACAG‑GGGGGGGATACCCGATGGCa > 1:352692/1‑48 (MQ=255) gCGGTTCCTTTCGAAAACGTGGGCACAG‑GGGGGGGATACCCGATGGCa < 2:352692/48‑1 (MQ=255) gTTCCTTTCGAAAACGTGGGCATAG‑GGGGGGGATACCCGATGGCATATTTGCGACCCTGGCGGTCAACGTTTAGGTGGGCAGGGGGCAAGCGGTAATAGCGGTAGCTTTTCCCTGAAAATATTGCAGcc < 1:389918/129‑1 (MQ=255) gTTCCTTTCGAAAACGTGGGCATAG‑GGGGGGGATACCCGATGGCATATTTGCGACCCTGGCGGTCAACGTTTAGGTGGGCAGGGGGCAAGCGGTAATAGCGGTAGCTTTTCCCTGAAAATATTGCAGcc > 2:389918/1‑129 (MQ=255) gTTCCTTTCGAAAACGTGGGCACAG‑GGGGGGGATAcc < 1:508320/37‑1 (MQ=255) gTTCCTTTCGAAAACGTGGGCACAG‑GGGGGGGATAcc > 2:508320/1‑37 (MQ=255) ttCGAAAACGTGGGCACAG‑GGGGGGGATACCCGATGGCATATTTGCGACCCTGGCGGTCAACGTTTAGGTGGGCAGGGGGCAAGCGGTAATAGCGGTAGCTTTTCCCTGAAAATATTGCAGCCGTTCGTTGGCTCGgtc < 2:531673/139‑1 (MQ=255) | GGGCATTCGCCGCGGATTCACCGTTAGTCTATTTAGGCGACAACTGGTACAAAATTAATGACTATCTTGCCGCCAAAGTTTTATTGCAGGTTAAAGGCAGTTCTCCTACTGCGGTTCCTTTCGAAAACGTGGGCACA‑‑GGGGGGGATACCCGATGGCATATTTGCGACCCTGGCGGTCAACGTTTAGGTGGGCAGGGGGCAAGCGGTAATAGCGGTAGCTTTTCCCTGAAAATATTGCAGCCGTTCGTTGGCTCGGTC > NC_000913/1002081‑1002337 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |