| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,564,585 | A→G | G383G (GGT→GGC) | dosP ← | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated, cold‑ and stationary phase‑induced bioflim regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,564,585 | 0 | A | G | 100.0% | 93.1 / NA | 25 | G383G (GGT→GGC) | dosP | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated, cold‑ and stationary phase‑induced bioflim regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (13/12); total (13/12) | |||||||||||
CACGCATAGCCAAGGCTATCAATCACATCCTGAATATGGTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGACCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTGACGGCTTTTTTCCTGTTCCAGCGCCAGCGCGGCCATATGCTGGCTGATATCTGCCACGCGTTCGATAAAGGCGCTGGTTTCTGCTCCTGACG > NC_000913/1564460‑1564718 | cACGCATAGCCAAGGCTATCAATCACATCCTGAATATGGTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGAt < 1:544438/139‑1 (MQ=255) acATAGCCAAGGCTATCAATCACATCCTGAATATGGTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCaa > 2:68571/2‑139 (MQ=255) cAAGGCTATCAATCACATCCTGAATATGGTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGAt < 1:68571/139‑1 (MQ=255) ggCTATCAATCACATCCTGAATATGGTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGa < 1:454195/138‑1 (MQ=255) ggCTATCAATCACATCCTGAATATGGTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGa > 2:454195/1‑138 (MQ=255) ccTGAATATGGTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTg > 2:244142/1‑139 (MQ=255) gTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGAt > 2:56880/1‑101 (MQ=255) gTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGAt < 1:56880/101‑1 (MQ=255) gTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGa > 1:376690/1‑113 (MQ=255) gTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGa < 2:376690/113‑1 (MQ=255) acacCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAg < 2:159340/110‑1 (MQ=255) acacCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAg > 1:159340/1‑110 (MQ=255) aTGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCaa < 1:505227/94‑1 (MQ=255) aTGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCaa > 2:505227/1‑94 (MQ=255) tGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTGACGGCTTTTTTCCTGTTCCAGCGCCAGCGCGGCCATATGCTGGCTGat > 2:113404/1‑139 (MQ=255) cAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTGACGGCTTTTTTCCTGTTCCAGCGCCAGCGCGGCCATATGCTGGCTGATATCTGCCACGCGTTCGATAAAg > 2:316254/1‑133 (MQ=255) cAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTGACGGCTTTTTTCCTGTTCCAGCGCCAGCGCGGCCATATGCTGGCTGATATCTGCCACGCGTTCGATAAAg < 1:316254/133‑1 (MQ=255) cAGGTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTGACGGCTTTTTTCCTGTTCCAGCGCCAGCGCGGCCATATGCTGGCTGATATCTGCCACGCGTTCGATAAAGGCGCTg < 1:113404/139‑1 (MQ=255) gTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAgtt < 2:450644/47‑1 (MQ=255) gTTATTGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAgtt > 1:450644/1‑47 (MQ=255) tGCGATTTGGCAGGCCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTGACGGCTTTTTTCCTGTTCCAGCGCCAGCGCGGCCATATGCTGGCTGATATCTGCCACGCGTTCGATAAAGGCGCTGGTTTCTGc > 1:568183/1‑139 (MQ=255) tGGCAGGCCGGTCATCGGATCAAATTGGATGAgttgtt < 2:21965/38‑1 (MQ=255) tGGCAGGCCGGTCATCGGATCAAATTGGATGAgttgtt > 1:21965/1‑38 (MQ=255) tGGCAGGCCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTGACGGCTTTTTTCCTGTTCCAGCGCCAGCGCGGCCATATGCTGGCTGATATCTGCCACGCGTTCGATAAAGGCGCTGGTTTCTGCTCCTGAc > 2:462941/1‑139 (MQ=255) ggCAGGCCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTGACGGCTTTTTTCCTGTTCCAGCGCCAGCGCGGCCATATGCTGGCTGATATCTGCCACGCGTTCGATAAAGGCGCTGGTTTCTGCTCCTGACg < 1:244142/139‑1 (MQ=255) | CACGCATAGCCAAGGCTATCAATCACATCCTGAATATGGTCAACACCGATGAGATACACCACGGGAGAGACGGCTTTGTCGACCAGGTCATCGAGGTAATTGTGCAGGTTATTGCGATTTGGCAGACCGGTCATCGGATCAAATTGGATGAGTTGTTCAATATGCTGACGGCTTTTTTCCTGTTCCAGCGCCAGCGCGGCCATATGCTGGCTGATATCTGCCACGCGTTCGATAAAGGCGCTGGTTTCTGCTCCTGACG > NC_000913/1564460‑1564718 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |