| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 265,137 | C→T | V24I (GTC→ATC) | yafX ← | CP4‑6 prophage, uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 265,137 | 0 | C | T | 100.0% | 62.3 / NA | 19 | V24I (GTC→ATC) | yafX | CP4‑6 prophage, uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (10/9); total (10/9) | |||||||||||
CCAGATACCACCGCTGTAGCCCTCACAGAAGCGGTCCATCCAGGCGAAGATATGCGGCTCCAGGAGTAGCCACTGCGGGATAGCGCCAAAGTACTGTGGCCAGAAATCGATACGCTGTTCATCGGGGACCGGCGTGACGGTCAGTTCAAATTCGGGTTGGTTAGCGGGTGCGAGGTCGTGCTGCGTCTGTGTTGTCATGGGTATGTCTCCGTCAATAAAAACGCCAGCGGCGATGGCTGGCGTATGGGGATA > NC_000913/265009‑265260 | ccAGATACCACCGCTGTAGCCCTCACAGAAGCGGTCCATCCAGGCGAAGATATGCGGCTCCAGGAGTAGCCACTGCGGGATAGCGCCAAAGTACTGTGGCCAGAAATCGATACGCTGTTCATCGGGGATCGGCGTGACg > 2:82521/1‑139 (MQ=255)ccAGATACCACCGCTGTAGCCCTCACAGAAGCGGTCCATCCAGGCGAAGATATGCGGCTCCAGGAGTAGCCACTGCGGGATAGCGCCAAAGTACTGTGGCCAGAAATCGATACGCTGTTCATCGGGGATCGGCGTGACg > 1:476136/1‑139 (MQ=255) caccGCTGTAGCCCTCACAGAAGCGGTCCATCCAGGCGAAGATATGCGGCTCCAGGAGTAGCCACTGCGGGATAGCGCCAAAGTACTGTGGCCAGAAATCGATACGCTGTTCATCGGGGATCGGCGTGACGGTCAGTTc < 1:546435/139‑1 (MQ=255) cGCTGTAGCCCTCACAGAAGCGGTCCATCCAGGCGAAGATATGCGGCTCCAGGAGTAGCCACTGCGGGATAGCGCCAAAGTACTGTGGCCAGAAATCGATACGCTGTTCATCGGGGATCGGCGTGACGGTCAGTTCaaa > 1:141443/1‑139 (MQ=255) tGTAGCCCTCACAGAAGCGGTCCATCCAGGCGAAGATATGCGGCTCCAGGAGTAGCCACTGCGGGATAGCGCCAAAGTACTGTGGCCAGAAATCGATACGCTGTTCATCGGGGATCGGCGTGACGGTCAGTTCAAATTc > 2:241395/1‑139 (MQ=255) cacaGAAGCGGTCCATCCAGGCGAAGATATGCGGCTCCAGGAGTAGCCACTGCGGGATAGCGCCAAAGTACTGTGGCCAGAAATCGATACGCTGTTCATCGGGGATCGGCGTGACGGTCAGTTCAAATTCGggttggtt > 2:160456/1‑139 (MQ=255) gTCCATCCAGGCGAAGATATGCGGCTCCAGGAGTAGCCACTGCGGGATAGCGCCAAAGTACTGTGGCCAGAAATCGATACGCTGTTCATCGGGGATCGGCGTGACGGTCAGTTCAAATTCGGGTTGGTTAGCGGGTGCg < 2:476136/139‑1 (MQ=255) tccatccaGGCGAAGATATGCGGCTCCAGGAGTAGCCACTGCGGGATAGCGCCAAAGTACTGTGGCCAGAAATCGATACGCTGTTCATCGGGGATCGGCGTGACGGTCAGTTCAAATTCggg < 2:567909/122‑1 (MQ=255) tccatccaGGCGAAGATATGCGGCTCCAGGAGTAGCCACTGCGGGATAGCGCCAAAGTACTGTGGCCAGAAATCGATACGCTGTTCATCGGGGATCGGCGTGACGGTCAGTTCAAATTCggg > 1:567909/1‑122 (MQ=255) cGAAGATATGCGGCTCCAGGAGTAGCCACTGCGGGATAGCGCCAAAGTACTGTGGCCAGAAATCGATACGCTGTTCATCGGGGATCGGCGTGACGGTCAGTTCAAATTCGGGTTGGTTAGCGGGTGCGAGGTCGtgctg < 2:141443/139‑1 (MQ=255) gAGTAGCCAATGCGGGATAGCGCCAAAGTACTGTGGCCAGAAATCGATACGCTGTTCATCGGGGATCGGCGTGACGGTCAGTTCAAATTCGGGTTGGTTAGCGGGTGCGAGGTCGTGCTGCGTCTGTGTTGTCATGGGt < 1:342209/139‑1 (MQ=255) aGCCACTGCGGGATAGCGCCAAAGTACTGTGGCCAGAAATCGATACGCTGTTCATCGGGGATCGGCGTGACGGTCAGTTCAAATTCGGGTTGGTTAGCGGGTGCGAGGTCGTGCTGCGTCTGTGTTGTCATGGGTATGt > 2:168532/1‑139 (MQ=255) aGAAATCGATACGCTGTTCATCGGGGATCGGCGTGACGGTCAGTTCAAATTCGggt > 2:249182/1‑56 (MQ=255) aGAAATCGATACGCTGTTCATCGGGGATCGGCGTGACGGTCAGTTCAAATTCGggt < 1:249182/56‑1 (MQ=255) aaaTCGATACGCTGTTCATCGGGGATCGGCGTGACGGTCAGTTCAAATTCggg < 1:311783/53‑1 (MQ=255) aaaTCGATACGCTGTTCATCGGGGATCGGCGTGACGGTCAGTTCAAATTCggg > 2:311783/1‑53 (MQ=255) aTACGCTGTTCACCGGGGATCGGCGGGACGGTCAGTTTAAATTCGTGTTGGTTAGCGGATGAGAGGTCGTGCTGCGTCTGTGTTGTCCTGGGTCTGTCTCCGCCAATAAAGACGCCAGCGCCGATGGCTGGCGTATggg < 1:159035/139‑1 (MQ=21) gCTGTTCATCGGGGATCGGCGTGACGGTCAGTTCAAATTCGGGTTGGTTAGCGGGTGCGAGGTCGTGCTGCGTCTGTGTTGTCATGGGTATGTCTCCGTCAATAAAAACGCCAGCGGCGATGGCTGGCGTATGGGGata < 1:362180/139‑1 (MQ=255) gggATCGGCGTGACGGTCAGTTCAAATTCGGGTTGGTTAGTGGGTGCGAGGTCGtg > 2:18033/1‑56 (MQ=39) gggATCGGCGTGACGGTCAGTTCAAATTCGGGTTGGTTAGTGGGTGCGAGGTCGtg < 1:18033/56‑1 (MQ=39) | CCAGATACCACCGCTGTAGCCCTCACAGAAGCGGTCCATCCAGGCGAAGATATGCGGCTCCAGGAGTAGCCACTGCGGGATAGCGCCAAAGTACTGTGGCCAGAAATCGATACGCTGTTCATCGGGGACCGGCGTGACGGTCAGTTCAAATTCGGGTTGGTTAGCGGGTGCGAGGTCGTGCTGCGTCTGTGTTGTCATGGGTATGTCTCCGTCAATAAAAACGCCAGCGGCGATGGCTGGCGTATGGGGATA > NC_000913/265009‑265260 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |