| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,000,873 | C→T | R51H (CGC→CAC) | fliZ ← | RpoS antagonist, putative regulator of FliA activity |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,000,873 | 0 | C | T | 100.0% | 72.7 / NA | 22 | R51H (CGC→CAC) | fliZ | RpoS antagonist, putative regulator of FliA activity |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (11/11); total (11/11) | |||||||||||
ATAATATCGAAAAAATCACTCTGCGTTTTGCAATGTAAATCACCGCAAAATCGGCACAATGCCGCCCATGATTTTTGTTCCGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTAAGGTAATGCGATCGAGTAATTTACGGCAATGCGCGCAATGGGTCTGGCTGTGTTTAAAGTCTTTAAGATAGCGGCTTAATGGCCGT > NC_000913/2000756‑2001001 | ataataTCGAAAAAATCACTCTGCGTTTTGCAATGTAAATCACCGCAAAATCGGCACAATGCCGCCCATGATTTTTGTTCCGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCGATTTTATTCa > 1:143357/1‑139 (MQ=255) aaaaaaTCACTCTGCGTTTTGCAATGTAAATCACCGCAAAATCGGCACAATGCCGCCCATGATTTTTGTTCCGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCGATTTTATTCACTATTTTGc > 1:43064/1‑139 (MQ=255) aTCACTCTGCGTTTTGCAATGTAAATCACCGCAAAATCGGCACAATGCCGCCCATGATTTTTGTTCCGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCGATTTTATTCACTATTTTGCCGTcg < 1:399629/139‑1 (MQ=255) cACTCTGCGTTTTGCAATGTAAATCACCGCAAAATCGGCACAATGCCGCCCATGATTTTTGTTCCGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCGATTTTATTCACTATTTTGCCGTcgcg < 2:472840/139‑1 (MQ=255) gCGTTTTGCAATGTAAATCACCGCAAAATCGGCACAATGCCGCCCATGATTTTTGTTCCGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGaa < 1:345353/135‑1 (MQ=255) gCGTTTTGCAATGTAAATCACCGCAAAATCGGCACAATGCCGCCCATGATTTTTGTTCCGTTGGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGaa > 2:345353/1‑135 (MQ=255) aaTCACCGCAAAATCGGCACAATGCCGCCCATGATTTTTGTTCCGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTAAGGTAATGCGATCGAg < 1:443150/139‑1 (MQ=255) cGCAAAATCGGCACAATGCCGCCCATGATTTTTGTTCCGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACt > 1:284318/1‑116 (MQ=255) cGCAAAATCGGCACAATGCCGCCCATGATTTTTGTTCCGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACt < 2:284318/116‑1 (MQ=255) gCACAATGCCGCCCATGATTTTTGTTCCGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTAAGGTAATGCGATCGAGTAATTTACGGCAATgc > 2:404862/1‑139 (MQ=255) cccATGATTTTTGTTCCGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTAAGGTAATGCGATCGAGTAATTTACGGCAATGCGCGCAATGGGt < 2:143357/139‑1 (MQ=255) cccATGATTTTTGTTCCGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTAAGGTAATGCGATCGAGTAATTTACGGCAATGCGCGCAATGGGt > 2:24841/1‑139 (MQ=255) gATTTTTGTTCCGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCg < 2:498717/60‑1 (MQ=255) gATTTTTGTTCCGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCg > 1:498717/1‑60 (MQ=255) gATTTTTGTTCCGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTAAGGTAATGCGATCGAGTAATTTACGGCAATGCGCGCAATGGGTCTGGc > 1:157820/1‑139 (MQ=255) ttCCGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTAAGGTAATGCGATCGAGTAATTTACGGCAATGCGCGCAATGGGTCTGGCTGTGTTTa < 1:24841/139‑1 (MQ=255) ccGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTAAGGTAATGCGATCGAGTAATTTACGGCAATGCGCGCAATGGGTCTGGCTGTGTTTaaa < 1:547291/139‑1 (MQ=255) ccGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTCGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTAAGGTAATGCGATCGAGTAATTTACGGCAATGCGCGCAATGGGTCTGGCTGTGTTTaaa < 1:404862/139‑1 (MQ=255) tttGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTAAGGTaa > 2:317898/1‑84 (MQ=255) tttGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGTGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTAAGGTaa < 1:317898/84‑1 (MQ=255) cGTGTCCAGGTGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTAAGGTAATGCGATCGAGTAATTTACGGCAATGCGCGCAATGGGTCTGGCTGTGTTTAAAGTCTTTAAGATAGCGGCTTAATGGCCGt > 1:35898/1‑139 (MQ=255) cGTGTCCAGGTGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTAAGGTAATGCGATCGAGTAATTTACGGCAATGCGCGCAATGGGTCTGGCTGTGTTTAAAGTCTTTAAGATAGCGGCTTAATGGCCGt > 2:518363/1‑139 (MQ=255) | ATAATATCGAAAAAATCACTCTGCGTTTTGCAATGTAAATCACCGCAAAATCGGCACAATGCCGCCCATGATTTTTGTTCCGTTTGCCAGCCATTTTCATCAAGCAGCGTGTCCAGGCGGGAAATCTCGATTTTATTCACTATTTTGCCGTCGCGAACTAAGGTAATGCGATCGAGTAATTTACGGCAATGCGCGCAATGGGTCTGGCTGTGTTTAAAGTCTTTAAGATAGCGGCTTAATGGCCGT > NC_000913/2000756‑2001001 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |