mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.1 revision aa8f2595a244
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,462,880 | 1 | . | C | 72.7% | 56.7 / 17.1 | 22 | intergenic (+234/‑132) | fadL/yfdF | long‑chain fatty acid outer membrane transporter/uncharacterized protein |
| * | NC_000913 | 566,277 | 0 | C | T | 50.0% | ‑0.9 / 47.1 | 34 | pseudogene (100/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 1,258,575 | 0 | A | G | 48.6% | ‑6.4 / 53.2 | 37 | intergenic (‑62/‑216) | pth/ychH | peptidyl‑tRNA hydrolase/DUF2583 family putative inner membrane protein |
| * | NC_000913 | 566,173 | 0 | C | G | 48.3% | ‑3.8 / 110.9 | 58 | pseudogene (204/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 4,296,060 | 0 | C | T | 47.8% | 7.6 / 27.6 | 23 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 566,245 | 0 | G | A | 43.9% | 17.3 / 48.1 | 41 | pseudogene (132/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,323 | 0 | C | T | 42.4% | 18.2 / 36.1 | 33 | pseudogene (54/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,205 | 0 | T | C | 39.1% | 23.0 / 50.3 | 46 | pseudogene (172/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,356 | 0 | T | C | 37.5% | 18.5 / 34.0 | 32 | pseudogene (21/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,332 | 0 | T | G | 35.3% | 34.1 / 45.3 | 34 | pseudogene (45/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 566,326 | 0 | T | C | 35.1% | 28.0 / 36.9 | 37 | pseudogene (51/279 nt) | exoD | pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related |
| * | NC_000913 | 2,734,535 | 1 | . | C | 23.5% | 30.2 / 14.9 | 17 | coding (500/732 nt) | yfiH | UPF0124 family protein |