BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,071,300	0	C	T	72.9%	339.7 / 175.2	221	intergenic (+89/‑17)	yeeP/isrC	pseudogene, CP4‑44 prophage, 50S ribosome‑binding GTPase family,Phage or Prophage Related, putative histone/novel sRNA, CP4‑44, putative prophage remnant
Reads supporting (aligned to +/- strand): ref base C (25/35); new base T (70/91); total (95/126)
Fisher's exact test for biased strand distribution p-value = 8.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 233 total aligned reads displayed.

GGTGGTCTCTGTTGCCCGTGCGGTATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAA  >  NC_000913/2071166‑2071437

 gtggtCTCTGTTGCCCGTGCGGTATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTtaataa                                                                                                                                      <  1:695067/139‑1 (MQ=255)

 gtggtCTCTGTTGCCCGTGCGGTATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTtaataa                                                                                                                                      <  2:278744/139‑1 (MQ=255)

 gtggtCTCTGTTGCCCGTGCGGTATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTtaataa                                                                                                                                      >  2:285826/1‑139 (MQ=255)

 gtggtCTCTGTTGCCCGTGCGGTATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTtaataa                                                                                                                                      <  1:257219/139‑1 (MQ=255)

       tctGTTGCCCGTGCGGTATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAAt                                                                                                                                >  2:596226/1‑139 (MQ=255)

           ttGCCCGTGCGGTATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATaaaa                                                                                                                            >  1:393173/1‑139 (MQ=255)

              cccGTGCGGTATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGa                                                                                                                         <  2:15541/139‑1 (MQ=255)

              cccGTGCGGTATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGa                                                                                                                         <  1:858386/139‑1 (MQ=255)

                cGTGCGGTATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATc                                                                                                                       <  2:307750/139‑1 (MQ=255)

                cGTGCGGTATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATc                                                                                                                       <  1:387163/139‑1 (MQ=255)

                 gTGCGGTATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCa                                                                                                                      >  1:505275/1‑139 (MQ=255)

                   gCGGTATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAat                                                                                                                    >  2:179050/1‑139 (MQ=255)

                   gCGGTATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAat                                                                                                                    <  2:265079/139‑1 (MQ=255)

                   gCGGTATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAat                                                                                                                    <  2:370154/139‑1 (MQ=255)

                                gtaTTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       <  1:1034498/137‑1 (MQ=255)

                                ggATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       <  2:1027663/139‑1 (MQ=255)

                                ggATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       <  2:538318/139‑1 (MQ=255)

                                ggATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       <  1:180236/139‑1 (MQ=255)

                                ggATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       <  1:919594/139‑1 (MQ=255)

                                ggATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       <  1:942551/139‑1 (MQ=255)

                                ggATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       <  1:7258/139‑1 (MQ=255)

                                agATTTTCTTCTGAATCTGTCGTGACTGATGACCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTAGTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       <  1:542227/138‑1 (MQ=255)

                                 gATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGAt                                                                                                                        <  2:644274/121‑1 (MQ=255)

                                 gATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAat                                                                                                                    >  2:124905/1‑125 (MQ=255)

                                 gATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTatcga                                                                                                      >  1:132720/1‑139 (MQ=255)

                                 gATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTatcga                                                                                                      >  1:634431/1‑139 (MQ=255)

                                 gATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       >  1:772686/1‑138 (MQ=255)

                                 gATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       >  1:698419/1‑138 (MQ=255)

                                   ttttCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTatcgatc                                                                                                    >  2:1045465/1‑139 (MQ=255)

                                        ttctGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTta                                                                                               <  2:268189/139‑1 (MQ=255)

                                                  gTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAatat                                                                                                                  <  2:850950/110‑1 (MQ=255)

                                                  gTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATAGTTTATAtcgatcga                                                                                     >  1:207971/1‑139 (MQ=255)

                                                  gTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATaaaa                                                                                                                            <  2:576949/100‑1 (MQ=255)

                                                  gTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAAc                                                                                                                           <  1:450189/101‑1 (MQ=255)

                                                   tCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATcgatcgat                                                                                    <  1:996073/139‑1 (MQ=255)

                                                   tCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATcgatcgat                                                                                    <  2:502163/139‑1 (MQ=255)

                                                       gACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTtaataa                                                                                                                                      >  2:333755/1‑85 (MQ=255)

                                                       gACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTtaataa                                                                                                                                      <  1:333755/85‑1 (MQ=255)

                                                       gACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGc                                                                                <  1:582579/139‑1 (MQ=255)

                                                       gACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATAGTTTATATCGATCGATAAGc                                                                                <  2:207971/139‑1 (MQ=255)

                                                       gACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACGGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGc                                                                                <  1:424928/139‑1 (MQ=255)

                                                       gACTGAAGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGc                                                                                <  1:922256/139‑1 (MQ=255)

                                                        aCTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAat                                                                                                                    <  1:255255/102‑1 (MQ=255)

                                                         cTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       >  1:98369/1‑114 (MQ=255)

                                                         cTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       <  2:98369/114‑1 (MQ=255)

                                                         cTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATcgatcgat                                                                                    <  2:910180/133‑1 (MQ=255)

                                                          tGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAat                                                                                                                    <  1:903657/100‑1 (MQ=255)

                                                             tGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGa                                                                                                                         >  2:95336/1‑92 (MQ=255)

                                                             tGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCtaataa                                                                          <  1:1045465/139‑1 (MQ=255)

                                                             tGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCtaataa                                                                          >  2:840281/1‑139 (MQ=255)

                                                                cctccctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAat                                                                                                                    >  1:102721/1‑94 (MQ=255)

                                                                cctccctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCtaataataa                                                                       <  2:188510/139‑1 (MQ=255)

                                                                 ctccctGACTCTGATTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATAtcgatcga                                                                                     >  1:302547/1‑124 (MQ=255)

                                                                 ctccctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAAc                                                                      >  2:975681/1‑139 (MQ=255)

                                                                  tcacggACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTcataa                                                                                                                                      >  1:645770/6‑74 (MQ=255)

                                                                   ccctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       >  1:159409/1‑104 (MQ=255)

                                                                    cctGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCtt                                                                   <  2:772936/139‑1 (MQ=255)

                                                                          tctGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCaataa                                                                                                                                      <  2:719880/66‑1 (MQ=255)

                                                                          tctGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAg                                                             <  2:1068616/139‑1 (MQ=255)

                                                                            tGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       <  2:1010274/95‑1 (MQ=255)

                                                                            tGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       >  2:392205/1‑95 (MQ=255)

                                                                            tGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTa                                                           >  2:510817/1‑139 (MQ=255)

                                                                              aGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       >  2:765302/1‑93 (MQ=255)

                                                                              aGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCtaataa                                                                          >  2:213268/1‑122 (MQ=255)

                                                                              aGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAAc                                                         >  1:48486/1‑139 (MQ=255)

                                                                              aGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAAc                                                         <  1:314255/139‑1 (MQ=255)

                                                                              aGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAAc                                                         >  2:919948/1‑139 (MQ=255)

                                                                              aGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       <  2:423911/93‑1 (MQ=255)

                                                                                 cTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATg                                                      <  2:169355/139‑1 (MQ=255)

                                                                                  tGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGc                                                     >  2:420021/1‑139 (MQ=255)

                                                                                   gCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCtaataa                                                                          <  2:449155/117‑1 (MQ=255)

                                                                                   gCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGca                                                    <  1:923201/139‑1 (MQ=255)

                                                                                   gCTCACAAAAGCACTGTTTTCGTTACTGTCGCGCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAAGATCTATTTTATCGATCGTTTATATCGATCGTTAAGCTAATAATAACCTTTGTCAGTAACATGca                                                    <  1:283638/139‑1 (MQ=255)

                                                                                      cacaAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAg                                                 <  2:312072/139‑1 (MQ=255)

                                                                                        caAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       >  2:884165/1‑83 (MQ=255)

                                                                                        caAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       <  1:884165/83‑1 (MQ=255)

                                                                                          aaaGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATAc                                             >  2:405908/1‑139 (MQ=255)

                                                                                           aaGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACg                                            <  2:132720/139‑1 (MQ=255)

                                                                                           aaGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACg                                            <  1:510817/139‑1 (MQ=255)

                                                                                             gCATTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTa                                          <  1:285826/139‑1 (MQ=255)

                                                                                              cACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTtaataa                                                                                                                                      <  1:220909/46‑1 (MQ=255)

                                                                                              cACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATcgatcgat                                                                                    >  2:669138/1‑96 (MQ=255)

                                                                                                   ttttCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGaaa                                    >  1:353546/1‑139 (MQ=255)

                                                                                                    tttCGTTACTGTCTCTCTTGTCCGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAg                                   <  1:405908/139‑1 (MQ=255)

                                                                                                    tttCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAg                                   <  1:1008172/139‑1 (MQ=255)

                                                                                                       cGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATcgatcgat                                                                                    >  1:447594/1‑87 (MQ=255)

                                                                                                        gTTACTGTCTCTCTTGTCCGTGCAATAGCTtaataa                                                                                                                                      <  2:8035/36‑1 (MQ=255)

                                                                                                        gTTACTGTCTCTCTTGTCCGTGCAATAGCTtaataa                                                                                                                                      >  1:8035/1‑36 (MQ=255)

                                                                                                           aCTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCa                            <  2:452050/139‑1 (MQ=255)

                                                                                                                 tctctTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGaac                      >  2:528602/1‑139 (MQ=255)

                                                                                                                         ccGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAAc              >  1:185425/1‑139 (MQ=255)

                                                                                                                         ccGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAAc              >  1:1104876/1‑139 (MQ=255)

                                                                                                                         ccGTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACAATCAGGGAACAACAGAAc              >  1:815803/1‑139 (MQ=255)

                                                                                                                          cGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAAcc             >  2:869627/1‑139 (MQ=255)

                                                                                                                           gTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTatcg                                                                                                       <  1:972836/48‑1 (MQ=255)

                                                                                                                           gTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACca            <  1:567427/139‑1 (MQ=255)

                                                                                                                           gTGCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACca            <  2:1104876/139‑1 (MQ=255)

                                                                                                                             gCAATAGCTTAATAATAGAATAAAACGATCAATATCTATTTTatcgat                                                                                                     >  2:220966/1‑48 (MQ=255)

                                                                                                                             gCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAg                                   >  2:606530/1‑114 (MQ=255)

                                                                                                                             gCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAg                                   <  1:606530/114‑1 (MQ=255)

GGTGGTCTCTGTTGCCCGTGCGGTATGGAACTGGATTTTCTTCTGAACCTGTCGTGACTGATGCCCTCCCTGACTCTGAGTCTGCTCACAAAAGCACTGTTTTCGTTACTGTCTCTCTTGTCCGTGCAATAGCTCAATAATAGAATAAAACGATCAATATCTATTTTATCGATCGTTTATATCGATCGATAAGCTAATAATAACCTTTGTCAGTAACATGCACAGATACGTACAGAAAGACATTCAGGGAACAACAGAACCACAATTCAGAA  >  NC_000913/2071166‑2071437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`