| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,198,498 | (AATGATGA)6→5 | intergenic (‑261/‑190) | ymfE ← / → lit | e14 prophage, putative inner membrane protein/T4 phage exclusion protein, cell death peptidase, e14 prophage |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1198454 | 1198461 | 8 | 58 [0] | [0] 58 | ymfE/lit | e14 prophage, putative inner membrane protein/T4 phage exclusion protein, cell death peptidase, e14 prophage |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1198462 = | 0 (0.000) | 47 (2.090) | 29/138 | 0.0 | 100% | intergenic (‑225/‑233) | ymfE/lit | e14 prophage, putative inner membrane protein/T4 phage exclusion protein, cell death peptidase, e14 prophage |
| ? | NC_000913 | = 1198453 | 0 (0.000) | intergenic (‑216/‑242) | ymfE/lit | e14 prophage, putative inner membrane protein/T4 phage exclusion protein, cell death peptidase, e14 prophage | |||||
ATCTGTTCAGGCTGACCTAGCTTCGCTGACAGACAATATTGTGATCAGTAGCACGTATCGAGGAGGAGTAGCGCTACAAATTTGACGCTGGGTGAGAATCTGAAATTGATAGAAATGAAATAATGAAATAATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACATGCTTACCTTAATCGTTCCCAGTGTGCCTATAGCAGATATTCTAAACATGTCGA > NC_000913/1198324‑1198596 | ttttttgtatctgttcaggctgacctagcttcgctgacagacaatattgtgatcagtagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataa < 2:621243‑M1/1‑1 (MQ=255) tgttcaggctgacctagcttcgctgacagacaatattgtgatcagtagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataatgaaatgatga > 2:762565‑M1/128‑139 (MQ=255) caggctgacctagcttcgctgacagacaatattgtgatcagtagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataatgaaatgatgaaatg > 1:312030‑M1/124‑139 (MQ=255) acctagcttcgctgacagacaatattgtgatcagtagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataatgaaatgatgaaatgatgaaat < 2:524758‑M1/23‑1 (MQ=255) cctagcttcgctgacagacaatattgtgatcagtagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataatgaaatgattaaatgatgaaatg < 2:596922‑M1/24‑1 (MQ=255) cctagcttcgctgacagacaatattgtgatcagtagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataatgaaatgatgaaatgatgaaatg < 2:211266‑M1/24‑1 (MQ=255) gctgacagacaatattgtgatcagtagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataatgaaatgatgaaatgatgaaatgatgaaatga < 1:149177‑M1/33‑1 (MQ=255) gctgacagacaatattgtgatcagtagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataatgaaatgatg > 2:92375‑M1/107‑117 (MQ=255) gctgacagacaatattgtgatcagtagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataatgaaatgatg < 1:92375‑M1/11‑1 (MQ=255) tattgtgatcagtagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGAc > 1:197129‑M1/95‑139 (MQ=255) tattgtgatcagtagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGAc > 2:627354‑M1/95‑139 (MQ=255) tgatcagtagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAgt > 1:596922‑M1/90‑139 (MQ=255) atcagtagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAgtgt < 2:384307‑M1/52‑1 (MQ=255) agtagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTgtcaa < 1:55165‑M1/55‑3 (MQ=255) agtagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCa < 2:8211‑M1/55‑1 (MQ=255) agtagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCa < 2:323182‑M1/55‑1 (MQ=255) agtagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCa < 1:160063‑M1/55‑1 (MQ=255) agtagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCa < 1:487942‑M1/55‑1 (MQ=255) tagcacgtatcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgaaagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGt < 2:555037‑M1/57‑1 (MQ=255) atcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGGAATGATGAAATGATGACAGAGTGTCCAGTGGGCACgg < 1:191612‑M1/65‑1 (MQ=255) atcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTggg < 1:247229‑M1/60‑1 (MQ=255) atcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTggg > 2:247229‑M1/75‑134 (MQ=255) atcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACgg < 2:589050‑M1/65‑1 (MQ=255) atcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAAAGTGTCCAGTGGGCACgg < 1:731660‑M1/65‑1 (MQ=255) atcgaggaggagtagcgctacaaatttgacgcagggtgagaatctgaaattgctagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATAATGAATTGATGCAATGATGACAGAGTGTCCAGTGGGCAcgt < 1:229397‑M1/65‑2 (MQ=255) tcgaggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGa > 2:160063‑M1/74‑139 (MQ=255) aggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATgg > 1:524758‑M1/71‑139 (MQ=255) ggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataatgaaatgatgaaatgatgaaatgatgaaatgatga > 1:310507‑M1/70‑105 (MQ=255) ggaggagtagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataatgaaatgatgaaatgatgaaatgatgaaatgatga < 2:310507‑M1/36‑1 (MQ=255) tagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTAc < 2:370392‑M1/77‑1 (MQ=255) tagcgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTAc < 1:16241‑M1/77‑1 (MQ=255) cgctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGAc < 1:291786‑M1/80‑1 (MQ=255) ctacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACAt < 1:144563‑M1/82‑1 (MQ=255) tacaaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACATg > 1:323182‑M1/57‑139 (MQ=255) acaaatttgacgctgggtgagaatctgcaactgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACATGc < 1:101894‑M1/84‑1 (MQ=255) caaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACg > 2:137955‑M1/55‑132 (MQ=255) caaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACg < 1:137955‑M1/78‑1 (MQ=255) caaatttgacgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACATGCt > 2:16241‑M1/55‑139 (MQ=255) acgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGAc > 1:409548‑M1/47‑91 (MQ=255) acgctgggtgagaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGAc < 2:409548‑M1/45‑1 (MQ=255) gaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACATGCTTACCTTAATCGTTCCCAgt > 1:8211‑M1/36‑139 (MQ=255) gaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACATGCTTACCTTAATCGTTCCCAgt > 2:653705‑M1/36‑139 (MQ=255) gaatctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACATGCTTACCTTAATCGTTCCCAgt > 2:2312‑M1/36‑139 (MQ=255) tctgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACACGCTTACCTTAATCGTTCCCAGtgtg < 1:786118‑M1/107‑1 (MQ=255) tgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACATGCTTACCTTAATCGTTCCCAGTGTGcc < 1:119946‑M1/109‑1 (MQ=255) tgaaattgatagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACATGCATACCTTAATCGTTCCCagtgtgac > 2:101894‑M1/31‑137 (MQ=255) atagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACATGCTTACCTTAATCGTTCCCAGTGTGCCTATAGCAg > 1:652826‑M1/23‑139 (MQ=255) atagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACATGCTTACCTTAATCGTTCCCAGTGTGCCTATAGCAg > 1:589050‑M1/23‑139 (MQ=255) atagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACATGCTTACCTTAATCGTTCCCAGTGTGCCTATAGCAg > 1:384307‑M1/23‑139 (MQ=255) tagaaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGGAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACATGCTTACCTTAATCGTTCCCAGTGTGCCTATAGCAGa > 2:191612‑M1/22‑139 (MQ=255) aaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATgg < 1:692286‑M1/69‑1 (MQ=255) aaatgaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATgg > 2:692286‑M1/19‑87 (MQ=255) gaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACagag < 2:516870‑M1/49‑1 (MQ=255) gaaataatgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACagag > 1:516870‑M1/15‑63 (MQ=255) atgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACATGCTTACCTTAATCGtt < 1:640080‑M1/98‑1 (MQ=255) atgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACATGCTTACCTTAATCGtt > 2:640080‑M1/9‑106 (MQ=255) atgaaataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACATGCTTACCTTAATCGTTCCCAGTGTGCCTATAGCAGATATTCTAAACATg < 1:392013‑M1/131‑1 (MQ=255) aataATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACATGCTTACCTTAATCGTTCCCAGTGTGCCTATAGCAGATATTCTAAACATGTCGa > 2:487942‑M1/5‑139 (MQ=255) | ATCTGTTCAGGCTGACCTAGCTTCGCTGACAGACAATATTGTGATCAGTAGCACGTATCGAGGAGGAGTAGCGCTACAAATTTGACGCTGGGTGAGAATCTGAAATTGATAGAAATGAAATAATGAAATAATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGAAATGATGACAGAGTGTCCAGTGGGCACGGATGGTGTCTTACGACATGCTTACCTTAATCGTTCCCAGTGTGCCTATAGCAGATATTCTAAACATGTCGA > NC_000913/1198324‑1198596 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |