| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 600,470 | C→T | A586V (GCG→GTG) | cusA → | copper/silver efflux system, membrane component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 600,470 | 0 | C | T | 100.0% | 84.5 / NA | 25 | A586V (GCG→GTG) | cusA | copper/silver efflux system, membrane component |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (12/13); total (12/13) | |||||||||||
TGCTGACGGTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAATTTTTACCGCAGATCAATGAAGGCGACTTGTTGTATATGCCATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGCGAGTATGCTGCAAAAAACCGACAAGCTAATTATGAGCGTACCTGAAGTGGCGCGGGTATTTGGCAAAACCGGGAAAGCGGAAACCGCCACCGATTCTGCTCCGCTGGAGATGGTAGAAACGACCATCCAGCTTA > NC_000913/600353‑600604 | tGCTGACGGTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAATTTTTACCGCAGATCAATGAAGGCGACTTGTTGTATATGCCATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGa < 2:378656/139‑1 (MQ=255) cTGACGGTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAATTTTTACCGCAGATCAATGAAGGCGACTTGTTGTATATGCCATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACa < 1:353144/139‑1 (MQ=255) cTGACGGTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAATTTTTACCGCAGATCAATGAAGGCGACTTGTTGTATATGCCATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACa < 1:770944/139‑1 (MQ=255) cTGACGGTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAATTTTTACCGCAGATCAATGAAGGCGACTTGTTGTATATGCCATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACa < 1:495216/139‑1 (MQ=255) ggCCGCTCAATAAAGTTGGCGGGGAATTTTTACCGCAGATCAATGAAGGCGACTTCTTGTATATGCCATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACAAGCTAATTATGAg < 2:425320/139‑1 (MQ=255) gCGGGGAATTTTTACCGCAGATCAATGAAGGCGACTTGTTGTATATGCCATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACAAGCt > 1:771961/1‑112 (MQ=255) gCGGGGAATTTTTACCGCAGATCAATGAAGGCGACTTGTTGTATATGCCATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACAAGCt < 2:771961/112‑1 (MQ=255) gCGACTTGTTGTATATGCCATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACa < 2:386312/78‑1 (MQ=255) gCGACTTGTTGTATATGCCATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACa > 1:386312/1‑78 (MQ=255) gCGACTTGTTGTATATGCCATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACAAGCTAATTATGAGCGTACCTGAAGTGGCGCGGGTATTTGGCAAAACCGGGAAAGCGGAAAc > 1:406830/1‑139 (MQ=255) tGCCATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACAAGCTAATTATGAGCGTACCTGAAGTGGCGCGGGTATTTGGCAAAACCGGGAAAGCGGAAACCGCCACCGATTCTGc > 1:153227/1‑139 (MQ=255) gCCATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACAAGCTAATTATGAGCGTACCTGAAGTGGCGCGGGTATTTGGCAAAACCGGGAAAGCGGAAACCGCCACCGATTCTGCt < 2:357008/139‑1 (MQ=255) gCCATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACAAGCTAATTATGAGCGTACCTGAAGTGGCGCGGGTATTTGGCAAAACCGGGAAAGCGGAAACCGCCACCGATTCTGCt > 1:357008/1‑139 (MQ=255) cATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACAAg > 1:738791/1‑62 (MQ=255) cATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACAAg < 2:738791/62‑1 (MQ=255) cATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACAAGCTAATTATGAg > 1:684070/1‑73 (MQ=255) cATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACAAGCTAATTATGAg < 2:684070/73‑1 (MQ=255) cGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACAAGCTAATTATGAGCGt < 2:51730/73‑1 (MQ=255) cGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACAAGCTAATTATGAGCGt > 1:51730/1‑73 (MQ=255) cGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACAAGCTAATTATGAGCGTACCTGAAGt < 1:625471/82‑1 (MQ=255) cGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACAAGCTAATTATGAGCGTACCTGAAGt > 2:625471/1‑82 (MQ=255) cGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACAAGCTAATTATGAGCGTACCTGAAGTGGCGCGGGTATTTGGCAAAACCGGGAAAGCGGAAACCGCCACCGATTCTGCTCCGCt > 1:16418/1‑139 (MQ=255) cTGCCGGGGATTTCCGCAGCAGAGGCGGTGAGTATGCTGCAAAAAACCGACAAGCTAATTATGAGCGTACCTGAAGTGGCGCGGGTATTTGGCAAAACCGGGAAAGCGGAAACCGCCACCGATTCTGCTCCGCTGgaga < 2:16418/139‑1 (MQ=255) agcagAGGCGGTGAGTATGCTGCAAAAAACCGACAAGCTAATTATGAGCGTACCTGAAGTGGCGCGGGTATTTGGCAAAACCGGGAAAGCGGAAACCGCCACCGATTCTGCTCCGCTGGAGATGGTAGAAACGACCATc > 1:104271/1‑139 (MQ=255) agGCGGTGAGTATGCTGCAAAAAACCGACAAGCTAATTATGAGCGTACCTGAAGTGGCGCGGGTATTTGGCAAAACCGGGAAAGCGGAAACCGCCACCGATTCTGCTCCGCTGGAGATGGTAGAAACGACCATCCAGCt > 2:456081/1‑139 (MQ=255) gcggtgAGTATGCTGCAAAAAACCGACAAGCTAATTATGAGCGTACCTGAAGTGGCGCGGGTATTTGGCAAAACCGGGAAAGCGGAAACCGCCACCGATTCTGCTCCGCTGGAGATGGTAGAAACGACCATCCAGCTTa < 2:104271/139‑1 (MQ=255) | TGCTGACGGTTCTCTGGCCGCTCAATAAAGTTGGCGGGGAATTTTTACCGCAGATCAATGAAGGCGACTTGTTGTATATGCCATCGACGCTGCCGGGGATTTCCGCAGCAGAGGCGGCGAGTATGCTGCAAAAAACCGACAAGCTAATTATGAGCGTACCTGAAGTGGCGCGGGTATTTGGCAAAACCGGGAAAGCGGAAACCGCCACCGATTCTGCTCCGCTGGAGATGGTAGAAACGACCATCCAGCTTA > NC_000913/600353‑600604 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |