| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,173,883 | G→A | pseudogene (396/914 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS,transport, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system galactitol‑specific enzyme IIC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,173,883 | 0 | G | A | 100.0% | 116.7 / NA | 34 | pseudogene (396/914 nt) | gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS,transport, Transport of small molecules: Carbohydrates, organic acids, alcohols, PTS system galactitol‑specific enzyme IIC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (18/16); total (18/16) | |||||||||||
AATACCTTCCAGCTCAAAGAAATTTCGGGTATCGCGGGCAAACCAGTCGCCGAGCTTATAAACAAACGCCGCGTGAATTACCACACCTGCCATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCGGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGG > NC_000913/2173748‑2174017 | aaTACCTTCCAGCTCAAAGAAATTTCGGGTATCGCGGGCAAACCAGTCGCCGAGCTTATAAACAAACGCCGCGTGAATTACCACACCTGCCATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTg < 2:617021/139‑1 (MQ=255) tCCAGCTCAAAGAAATTTCGGGTATCGCGGGCAAACCAGTCGCCGAGCTTATAAACAAACGCCGCGTGAATTACCACACCTGCCATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCa > 2:61280/1‑139 (MQ=255) tCCAGCTCAAAGAAATTTCGGGTATCGCGGGCAAACCAGTCGCCGAGCTTATAAACAAACGCCGCGTGAATTACCACACCTGCCATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCa > 2:46577/1‑139 (MQ=255) tCCAGCTCAAAGAAATTTCGGGTATCGCGGGCAAACCAGTCGCCGAGCTTATAAACAAACGCCGCGTGAATTACCACACCTGCCATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCa > 2:266298/1‑139 (MQ=255) ttCGGGTATCGCGGGCAAACCAGTCGCCGAGCTTATAAACAAACGCCGCGTGAATTACCACACCTGCCATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCa < 1:46577/139‑1 (MQ=255) gTATCGCGGGCAAACCAGTCGCCGAGCTTATAAACAAACGCCGCGTGAATTACCACACCTGCCATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGatat < 1:266298/139‑1 (MQ=255) gTATCGCGGGCAAACCAGTCGCCGAGCTTATAAACAAACGCCGCGTGAATTACCACACCTGCCATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGatat < 1:363607/139‑1 (MQ=255) cAAACCAGTCGCCGAGCTTATAAACAAACGCCGCGTGAATTACCACACCTGCCATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTac < 2:46358/139‑1 (MQ=255) aGTCGCCGAGCTTATAAACAAACGCCGCGTGAATTACCACACCTGCCATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCcg < 1:61280/139‑1 (MQ=255) gAGCTTATACACAAACGCCGCGTGAATTACCACACCTGCCATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATa < 1:730565/139‑1 (MQ=255) aGCTTATAAACAAACGCCGCGTGAATTACCACACCTGCCATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATAc < 2:203895/139‑1 (MQ=255) gcgTGAATTACCACACCTGCCATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCa > 2:538601/1‑139 (MQ=255) ccACACCTGCCATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATAc > 2:99932/1‑111 (MQ=255) ccACACCTGCCATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATAc < 1:99932/111‑1 (MQ=255) gCCATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCaa > 2:714759/1‑139 (MQ=255) ccATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGa < 1:504079/66‑1 (MQ=255) ccATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGa > 2:504079/1‑66 (MQ=255) tATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATc > 1:783719/1‑139 (MQ=255) atcatcCATGAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCg > 2:692445/1‑139 (MQ=255) gAACCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAgcg > 2:69413/1‑139 (MQ=255) aCCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATa < 2:386353/82‑1 (MQ=255) aCCGGTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATa > 1:386353/1‑82 (MQ=255) gTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCatat < 2:416737/37‑1 (MQ=255) gTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCatat > 1:416737/1‑37 (MQ=255) gTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATGCGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAAttt > 2:433934/1‑139 (MQ=255) gTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAAttt > 2:123399/1‑139 (MQ=255) gTTGCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAAttt > 2:397873/1‑139 (MQ=255) gCCAGATGCAGCAACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCg < 1:660276/139‑1 (MQ=255) gcaACGCGCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGt < 2:783719/139‑1 (MQ=255) cgcgCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCAtt > 2:789809/1‑139 (MQ=255) cgcgCCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCAtt < 1:205436/139‑1 (MQ=255) cgcCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGt < 1:163593/133‑1 (MQ=255) cgcCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGt > 2:163593/1‑133 (MQ=255) cgcCAGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTgg > 1:449465/1‑139 (MQ=255) | AATACCTTCCAGCTCAAAGAAATTTCGGGTATCGCGGGCAAACCAGTCGCCGAGCTTATAAACAAACGCCGCGTGAATTACCACACCTGCCATCCCTATCATCCATGAACCGGTTGCCAGATGCAGCAACGCGCCGGTGAAGGTCATATGCCAGATATTCCAGATATCAACATTTACCACCCGCGTCATACGGGTCAGTAACATCGCCACGTTAACCAGAATCGCAATCGGAATCGCCACCAGCGCAATTTGCGACGCCCAGGTCATTGG > NC_000913/2173748‑2174017 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |