| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,771,806 | A→T | intergenic (+191/+196) | yfjT → / ← yfjU | CP4‑57 prophage, putative periplasmic protein/CP4‑57 prophage, conserved protein,Phage or Prophage Related |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,771,806 | 0 | A | T | 94.6% | 120.1 / ‑0.3 | 37 | intergenic (+191/+196) | yfjT/yfjU | CP4‑57 prophage, putative periplasmic protein/CP4‑57 prophage, conserved protein,Phage or Prophage Related |
| Reads supporting (aligned to +/- strand): ref base A (0/2); new base T (17/18); total (17/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.89e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.88e-01 | |||||||||||
AGAGGTAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAAT > NC_000913/2771691‑2771932 | agagGTAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATgg > 2:363472/1‑139 (MQ=255)agagGTAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATgg > 2:187302/1‑139 (MQ=255)agagGTAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATgg < 1:363472/139‑1 (MQ=255) gTAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGGTGTATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTc > 1:795514/1‑114 (MQ=255) gTAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTc < 2:795514/114‑1 (MQ=255) gTAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTc > 2:708598/1‑139 (MQ=255) tAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCa < 1:315735/139‑1 (MQ=255) tAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCa < 2:494685/139‑1 (MQ=255) ggCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGa < 2:674368/129‑1 (MQ=255) ggCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGa > 1:674368/1‑129 (MQ=255) ggCCACGTACTTTCGAACGATGAGCGCAGAGGTCAGTTTTTTTCACATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCata > 1:462521/1‑139 (MQ=255) tACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGt < 1:44816/114‑1 (MQ=255) tACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGt > 2:44816/1‑114 (MQ=255) aCTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAAc < 1:104561/139‑1 (MQ=255) aCTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAAc < 1:187302/139‑1 (MQ=255) aTGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATa < 1:798795/139‑1 (MQ=255) aTGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATa < 2:597613/139‑1 (MQ=255) tGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATaa < 1:278559/139‑1 (MQ=255) tGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATgag < 1:708598/139‑1 (MQ=255) atatatTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTGAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCa > 1:656138/1‑139 (MQ=255) atatatTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCAtt > 2:16543/1‑105 (MQ=255) atatatTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCAtt < 1:16543/105‑1 (MQ=255) tttttGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTaaaaa > 2:657644/1‑139 (MQ=255) tGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGata < 2:462521/139‑1 (MQ=255) tGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATatgaa > 1:437764/1‑139 (MQ=255) aGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGa < 1:345616/129‑1 (MQ=255) aGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGa > 2:345616/1‑129 (MQ=255) cgcAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATatgaat > 2:660618/1‑122 (MQ=255) cgcAGGCTGTGTTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATatgaat < 1:660618/122‑1 (MQ=255) gtgtTAAAACTCCTGTTCACTTTTTGGTCTAAGCg > 1:597666/1‑35 (MQ=37) gtgtTAAAACTCCTGTTCACTTTTTGGTCTAAGCg < 2:597666/35‑1 (MQ=255) gtgtTAAAACTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCAtt < 2:537271/58‑1 (MQ=255) gtgtTAAAACGCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCAtt > 1:537271/1‑58 (MQ=255) aaCTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAAt < 2:653615/135‑1 (MQ=255) aaCTCCTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAAt > 1:653615/1‑135 (MQ=255) ccTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAAccc > 1:59482/1‑59 (MQ=255) ccTGTTCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAAccc < 2:59482/59‑1 (MQ=255) | AGAGGTAGGCCACGTACTTTCGAACGATGAGCGCAGTGGTCAGTTTTTTTCAGATATATTTATCTTTTTTTGGCTGTAAGCTCCGCTGTGAGCGCAGGCTGTGTTAAAACTCCTGATCACTTTTTGGTCTAAGCGATGGTTTCATATGATCAACCATTCTTGATAAACCCATGAGACGGACTAACTTTTTCATTAAAATTAAAAAGATATGAATGAATACTGCGGATATCAACATGGCCAAT > NC_000913/2771691‑2771932 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |