| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,759,929 | T→C | H315H (CAT→CAC) | yfjI → | CP4‑57 prophage, uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,759,929 | 0 | T | C | 100.0% | 52.3 / NA | 15 | H315H (CAT→CAC) | yfjI | CP4‑57 prophage, uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (8/7); total (8/7) | |||||||||||
AATTTTTTCAAATGAACATTTGCCGGTATTTCACCAACGTCTTATGGAAATTGTTAATGAGAGCATCATTAAAATTAATGAAAATAATCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACATTGGATCGAATTCTACAACCAGGTCGAGTCAGAAATGAGAATGATTGGCCTTCTTTATGATTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGC > NC_000913/2759803‑2760027 | aaTTTTTTCAAATGAACATTTGCCGGTATTTCACCAACGTCTTATGGAAATTGTTAATGAGAGCATCATTAAAATTAATGAAAATAATCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACACTGGATCGAATTc < 2:48026/139‑1 (MQ=255) tGTTAATGAGAGCATCATTAAAATTAATGAAAATAATCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACACTGGATCg < 1:472043/83‑1 (MQ=255) tGTTAATGAGAGCATCATTAAAATTAATGAAAATAATCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACACTGGATCg > 2:472043/1‑83 (MQ=255) ttAATGAGAGCATCATTAAAATTAATGAAAATAATCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACACTGGATCGAATTCTACAACCAGGt > 1:56165/1‑97 (MQ=255) ttAATGAGAGCATCATTAAAATTAATGAAAATAATCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACACTGGATCGAATTCTACAACCAGGt < 2:56165/97‑1 (MQ=255) agagCATCATTAAAATTAATGAAAATAATCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACACTGGATCGAATTCTACAACCAGGTCGAGTCAGAAATGAGAATGATTGGCCTTCTTTATGATTTTAAGGATTa < 2:333248/139‑1 (MQ=255) agCATCATTAAAATTAATGAAAATAATCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACACTGGATCGAATTCTACAACCAGGTCGAGTCAGAAATGAGAATGATTGGc < 1:28458/114‑1 (MQ=255) agCATCATTAAAATTAATGAAAATAATCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACACTGGATCGAATTCTACAACCAGGTCGAGTCAGAAATGAGAATGATTGGc > 2:28458/1‑114 (MQ=255) agCATCATTAAAATTAATGAAAATAATCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACACTGGATCGAATTCTACAACCAGGTCGAGTCAGAAATGAGAATGATTGGCCTTCTTTATGATTTTAAGGATTATg > 2:128072/1‑139 (MQ=255) agCATCATTAAAATTAATGAAAATAATCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACACTGGATCGAATTCTACAACCAGGTCGAGTCAGAAATGAGAATGATTGGCCTTCTTTATGATTTTAAGGATTATg > 2:479113/1‑139 (MQ=255) catcatTAAAATTAATGAAAATAATCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACACTGGATCGAATTCTACAACCAGGTCGAGTCAGAAATGAGAATGATTGGCCTTCTTTATGATTTTAAGGATTATGCt > 1:166500/1‑139 (MQ=255) aaaTTAATGAAAATAATCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACACTGGATCGa < 1:536393/64‑1 (MQ=255) aaaTTAATGAAAATAATCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACACTGGATCGa > 2:536393/1‑64 (MQ=255) aaaTTAATGAAAATAATCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACACTGGATCGAATTCTACAACCAGGTCGAGTCAGAAATGAGAATGATTGGCCTTCTTTATGATTTTAAGGATTATGCTTCTAAAAt > 1:179589/1‑139 (MQ=255) atCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACACTGGATCGAATTCTACAACCAGGTCGAGTCAGAAATGAGAATGATTGGCCTTCTTTATGATTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGc < 2:179589/139‑1 (MQ=17) | AATTTTTTCAAATGAACATTTGCCGGTATTTCACCAACGTCTTATGGAAATTGTTAATGAGAGCATCATTAAAATTAATGAAAATAATCGCATCTGCCTCCGATTCTCTGCAGAAGCAGAAAGACATTGGATCGAATTCTACAACCAGGTCGAGTCAGAAATGAGAATGATTGGCCTTCTTTATGATTTTAAGGATTATGCTTCTAAAATGGCGGAGAACATGGC > NC_000913/2759803‑2760027 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |