| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,276,719 | A→G | F300F (TTT→TTC) | narX ← | sensory histidine kinase in two‑component regulatory system with NarL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,276,719 | 0 | A | G | 100.0% | 170.9 / NA | 47 | F300F (TTT→TTC) | narX | sensory histidine kinase in two‑component regulatory system with NarL |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (21/26); total (21/26) | |||||||||||
CCGTACTGCGTATGAGAGTCAGCCAGCCGCCACTTCAGGGTCGTGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTAAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCAATTCGATATCACGTAGCAGGGTTAAATTCTGTAAGCCGTTGAGTACAGGTGACAGGCGTTCACACAGCGGGGCGCGGGAATGCAAACGGC > NC_000913/1276594‑1276852 | ccGTACTGCGTATGAGAGTCAGCCAGCCGCCACTTCAGGGTCGTGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGACAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGATCTCCTgatgat < 2:873871/139‑1 (MQ=255) cGTATGAGAGTCAGCCAGCCGCCACTTCAGGGTCGTGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTtca > 1:834397/1‑139 (MQ=255) tGAGAGTCAGCCAGCCGCCACTTCAGGGTCGTGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGTTTCTCTtcatcat < 2:1011700/139‑1 (MQ=255) tGAGAGTCAGCCAGCCGCCACTTCAGGGTCGTGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTtcatcat < 2:804881/139‑1 (MQ=255) agagTCAGCCAGCCGCCACTTCAGGGTCGTGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTtcatcatca < 1:511313/139‑1 (MQ=255) tCAGCCAGCCGCCACTTCAGGGTCGTGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAgtgt > 2:155472/1‑139 (MQ=255) agccagccGCCACTTCAGGGTCGTGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATtctc > 2:911017/1‑123 (MQ=255) agccagccGCCACTTCAGGGTCGTGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATtctc < 1:911017/123‑1 (MQ=255) gccgccACTTCAGGGTCGTGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATacac > 1:1224499/1‑139 (MQ=255) ccgccACTTCAGGGTCGTGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTtcatcat > 1:1038491/1‑125 (MQ=255) ccgccACTTCAGGGTCGTGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTtcatcat < 2:1038491/125‑1 (MQ=255) aCTTCAGGGTCGTGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCaa < 2:1224499/139‑1 (MQ=255) aCTTCAGGGTCGTGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCaa < 1:53829/139‑1 (MQ=255) tGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCg < 1:1415141/124‑1 (MQ=255) tGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCg > 2:1415141/1‑124 (MQ=255) tGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCAATTCGata < 2:1223056/134‑1 (MQ=255) tGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCAATTCGata > 1:1223056/1‑134 (MQ=255) tGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCAATTCGATATCACg > 1:784512/1‑139 (MQ=255) ccGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCAATTCGATATCa > 1:1254554/1‑135 (MQ=255) ccGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCAATTCGATATCa < 2:1254554/135‑1 (MQ=255) aTCACGAACGGGTAATACGCCGCGCGGGCAGGGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCCCTTCATCATCAGTGTCATACACCCGCAATTCGATATCACGTAGCAgg < 2:144694/139‑1 (MQ=255) aaCGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCAATTCGATATCACGTAGCAGGGTTaaa < 1:1416630/139‑1 (MQ=255) tACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCAATTCGATATCACGTAGCAGGGTTAAATTCTGTAAg < 1:1228414/139‑1 (MQ=255) tACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCAATTCGATATCACGTAGCAGGGTTAAATTCTGTAAg < 2:834397/139‑1 (MQ=255) cgccgcGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTtcatcat < 1:885619/84‑1 (MQ=255) cgccgcGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTtcatcat > 2:885619/1‑84 (MQ=255) cgcgcgGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCAATTCGATATCACGTAGCAGGGTTAAATTCTGTAAGCCGtt > 1:421376/1‑139 (MQ=255) gcgcgGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTc < 1:1330458/60‑1 (MQ=255) gcgcgGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTc > 2:1330458/1‑60 (MQ=255) gcgcgGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTtcatcat < 2:231812/80‑1 (MQ=255) gcgcgGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTtcatcat > 1:231812/1‑80 (MQ=255) gcgcgGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTtc > 2:502097/1‑75 (MQ=255) gcgcgGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTtc < 1:502097/75‑1 (MQ=255) gggCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCAATTCGATATCACGTAGCAGGGTTAAATTCTGTAAGCCGTTGAGTa < 2:784512/139‑1 (MQ=255) gCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCAATTCGATATCACGTAGCAGGGTTAAATTCTGTAAGCCGTTGAGTACAGGTGa > 2:1324717/1‑139 (MQ=255) catcaCAAGTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCAATTCGATATCACGTAGCAGGGTTAAATTCTGTAAGCCGTTGAGTACAGGTGACAGGCGTTCACACAg < 2:421376/139‑1 (MQ=255) gTCATATCTGGCTGGCAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCAATTCGATATCACGTAGCAGGGTTAAATTCTGTAAGCCGTTGAGTACAGGTGACAGGCGTTCACACAGCGGGgcgc > 2:232671/1‑139 (MQ=255) gctggcAGGTGAACTCCTGATGATTCTCTtcatcatca < 2:1334474/38‑1 (MQ=255) gctggcAGGTGAACTCCTGATGATTCTCTtcatcatca > 1:1334474/1‑38 (MQ=255) gctggcAGGTGAACTCCTGATGATTCTCTtcatcat > 2:1116906/1‑36 (MQ=255) gctggcAGGTGAACTCCTGATGATTCTCTtcatcat < 1:1116906/36‑1 (MQ=255) gctggcAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATa < 2:1317704/46‑1 (MQ=255) gctggcAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATa > 1:1317704/1‑46 (MQ=255) gctggcAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCAATTCGATATCACGTAGCAGGTTTAAATTCTGTAAGCCGTTGAGTACAGGTGACAGGCGTTCACACAGCGGGGCGCgg < 1:243821/131‑1 (MQ=255) gctggcAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCAATTCGATATCACGTAGCAGGGTTAAATTCTGTAAGCCGTTGAGTACAGGTGACAGGCGTTCACACAGCGGGGCGCgg > 2:243821/1‑131 (MQ=255) ctggcAGGTGAACTCCTGATGATTCTCTtcatcat < 2:891437/35‑1 (MQ=255) cAGGTGAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCAATTCGATATCACGTAGCAGGGTTAAATTCTGTAAGCCGTTGAGTACAGGTGACAGGCGTTCACACAGCGGGGCGCGGGAATGCAAAcggc > 2:1362677/1‑139 (MQ=255) | CCGTACTGCGTATGAGAGTCAGCCAGCCGCCACTTCAGGGTCGTGCCGCGATCACCAACGGGTAATACGCCGCGCGGGCAGAGCTGGCAGCCTTTATCATCACAAGTCATATCTGGCTGGCAGGTAAACTCCTGATGATTCTCTTCATCATCAGTGTCATACACCCGCAATTCGATATCACGTAGCAGGGTTAAATTCTGTAAGCCGTTGAGTACAGGTGACAGGCGTTCACACAGCGGGGCGCGGGAATGCAAACGGC > NC_000913/1276594‑1276852 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |