| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,280,946 | G→A | pseudogene (246/375 nt) | agaW → | pseudogene, N‑acetylgalactosamine‑specific enzyme IIC component of PTS,enzyme, Central intermediary metabolism: Amino sugars, PTS system N‑acetylgalactosameine‑specific IIC component 2 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,280,946 | 0 | G | A | 100.0% | 146.2 / NA | 42 | pseudogene (246/375 nt) | agaW | pseudogene, N‑acetylgalactosamine‑specific enzyme IIC component of PTS,enzyme, Central intermediary metabolism: Amino sugars, PTS system N‑acetylgalactosameine‑specific IIC component 2 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (24/18); total (24/18) | |||||||||||
GGCGATCTGCATACCGGAATTTTAACCGGCGGTACGCTGGAACTGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACGGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTACAGATGGGGATTACCTTCCTGTTCTCGGTGATGTCCGGCGTGATGTCTCGCTGCGACCT > NC_000913/3280830‑3281077 | ggCGATCTGCATACCGGAATTTTAACCGGCGGTACGCTGGAACTGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGt > 1:952287/1‑121 (MQ=255)ggCGATCTGCATACCGGAATTTTAACCGGCGGTACGCTGGAACTGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGt < 2:952287/121‑1 (MQ=255) tGCATACCGGAATTTTAACCGGCGGTACGCTGGAACTGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAAcc > 1:1497907/1‑139 (MQ=255) ttttAACCGGCGGTACGCTGGAACTGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATg > 1:118485/1‑132 (MQ=255) ttttAACCGGCGGTACGCTGGAACTGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATg < 2:118485/132‑1 (MQ=255) ggcggTACGCTGGAACTGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCg > 1:929970/1‑139 (MQ=255) cggTACGCTGGAACTGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGcc > 1:1343065/1‑139 (MQ=255) cggTACGCTGGAACTGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGcc < 2:929970/139‑1 (MQ=255) ggAACTGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGttt < 2:508033/85‑1 (MQ=255) ggAACTGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGttt > 1:508033/1‑85 (MQ=255) gtgtGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCg < 2:1346709/139‑1 (MQ=255) aTGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTAc > 1:203773/1‑139 (MQ=255) gggCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTACAGa < 2:920556/139‑1 (MQ=255) ggCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGtt > 1:988068/1‑67 (MQ=255) ggCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGcc < 2:1270752/71‑1 (MQ=255) ggCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGcc > 1:1270752/1‑71 (MQ=255) ggCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATtactac > 2:232463/1‑79 (MQ=255) ggCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATtactac < 1:232463/79‑1 (MQ=255) ggCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTACAGAt > 2:721155/1‑139 (MQ=255) ggCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGACTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTACAGAt > 1:5134/1‑139 (MQ=255) ggCTCGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCTCAGCGtt < 2:988068/67‑1 (MQ=255) gCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTACAGATGGGGa > 2:702823/1‑139 (MQ=255) gCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTACAGATGGGGa > 1:42668/1‑139 (MQ=255) gCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCg > 1:387966/1‑119 (MQ=255) gCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCg < 2:387966/119‑1 (MQ=255) ggcgCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGTAGTAGGTGTCGCCGTACCTTTCGc < 1:696280/107‑1 (MQ=255) ggcgCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGTAGTAGGTGTCGCCGTACCTTTCGc > 2:696280/1‑107 (MQ=255) cgcACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGaaa < 1:1223022/70‑1 (MQ=255) cgcACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGaaa > 2:1223022/1‑70 (MQ=255) tGATTATCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTACAGATGGGGATTACCTTCCTGTTCTCGGTGATGTCCGGCGt > 1:395689/1‑139 (MQ=255) tCGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTACAGATGGGGATTACCTTCCTGTTCTCGGTGATGTCCGGCGTGATGtc < 2:5134/139‑1 (MQ=255) cGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTACAGATGGGGATTa < 2:1417508/104‑1 (MQ=255) cGGTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTACAGATGGGGATTa > 1:1417508/1‑104 (MQ=255) gTACTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTACAGATGGGGATTACCTTCCTGTTCTCGGTGATGTCCGGCGTGATGTCTCg > 2:932994/1‑139 (MQ=255) aCTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGa > 2:662757/1‑47 (MQ=255) aCTATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGa < 1:662757/47‑1 (MQ=255) tATCGTCGGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTACAGATGGGGATTACCTTCCTGTTCTCGGTGATGTCCGGCGTGATGTCTCGCTGc > 1:684291/1‑139 (MQ=255) tcgtcgGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTACAGATgggg > 2:444805/1‑92 (MQ=255) tcgtcgGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTACAGATgggg < 1:444805/92‑1 (MQ=255) tcgGCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTACAGATGGGGATTACCTTCCTGTTCTCGGTGATGTCCGGCGTGATGTCTCGCTGCGACCt < 2:395689/139‑1 (MQ=255) ggCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTACAGATGGGGATTACCTTCCTGTTCTCGGTGATGTCCGGCGTGATGTCTCGCTg > 2:425894/1‑131 (MQ=255) ggCACAGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTACAGATGGGGATTACCTTCCTGTTCTCGGTGATGTCCGGCGTGATGTCTCGCTg < 1:425894/131‑1 (MQ=255) | GGCGATCTGCATACCGGAATTTTAACCGGCGGTACGCTGGAACTGGTGTGGATGGGGCTGGCCCCGCTGGCGGGCGCACAGCCGCCTAACGTGATTATCGGTACTATCGTCGGCACGGCGTTTGCCATTACTACTGGCGTGAAACCCGATGTCGCAGTAGGTGTCGCCGTACCTTTCGCTGTCGCAGTACAGATGGGGATTACCTTCCTGTTCTCGGTGATGTCCGGCGTGATGTCTCGCTGCGACCT > NC_000913/3280830‑3281077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |