| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,128,620 | A→G | T117A (ACG→GCG) | glcC → | glycolate‑inducible glc operon transcriptional repressor, autorepressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,128,620 | 0 | A | G | 96.3% | 94.4 / ‑4.0 | 27 | T117A (ACG→GCG) | glcC | glycolate‑inducible glc operon transcriptional repressor, autorepressor |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (13/13); total (13/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01 | |||||||||||
TCGCACGGCTTAATCGGGTGCAGGACACCAGCCCGCTGATCCATCTGTTCAGTACGCAGCCGCGAACGCTGTACGATCTGCTCGACGTTCGCGCATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAACGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCAGTGAGAACAACAAAGAGATTTCGCTGATCGAACATGCGCAGTTGGATCACGCTTTCCATCTCGCCATTTGTCAGG > NC_000913/3128483‑3128749 | tCGCACGGCTTAATCGGGTGCAGGACACCAGCCCGCTGATCCATCTGTTCAGTACGCAGCCGCGAACGCTGTACGATCTGCTCGACGTTCGCGCATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAAc < 1:39590/139‑1 (MQ=255) cGGGTGCAGGACACCAGCCCGCTGATCCATCTGTTCAGTACGCAGCCGCGAACGCTGTACGATCTGCTCGACGTTCGCGCATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTttg < 2:58314/139‑1 (MQ=255) cccGCTGATCCATCTGTTCAGTACGCAGCCGCGAACGCTGTACGATCTGCTCGACGTTCGCGCATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGt > 2:430767/1‑139 (MQ=255) aGTACGCAGCCGCGAACGCTGTACGATCTGCTCGACGTTCGCGCATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTcgccg < 1:2818/139‑1 (MQ=255) aGCCGCGAACGCTGTACGATCTGCTCGACGTTCGCGCATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCa < 1:387627/135‑1 (MQ=255) aGCCGCGAACGCTGTACGATCTGCTCGACGTTCGCGCATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCAGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCa > 2:387627/1‑135 (MQ=255) gCTGTACGATCTGCTCGACGTTCGCGCATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCAGTGAGAACAACaaa < 1:282600/139‑1 (MQ=255) cTGCTCGACGTTCGCGCATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCAGTGAGAACAACAAAGAGATTTCGc > 2:83820/1‑139 (MQ=255) gCTCGACGTTCGCGCATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCAGTgaga > 1:585142/1‑119 (MQ=255) gCTCGACGTTCGCGCATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCAGTgaga < 2:585142/119‑1 (MQ=255) aCGTTCGCGCATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCAGTGAGAACAACAAAGAGATTTCGCTGATCGa < 2:217009/139‑1 (MQ=255) gTTCGCGCATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCt < 1:3611/98‑1 (MQ=255) gTTCGCGCATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCt > 2:3611/1‑98 (MQ=255) gTTCGCGCATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCAGTGAGAACAACAAAGAGATTTCGCTGATCGAAc > 1:457512/1‑139 (MQ=255) cgcgCATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCAGTGAGAACAACAAAGAGATTTCGCTGATCGAACATg < 1:169789/139‑1 (MQ=255) gcgcATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCAGTGAGAACAACAAAGAGATTTCGCTGATCGa < 1:317912/133‑1 (MQ=255) gcgcATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCAGTGAGAACAACAAAGAGATTTCGCTGATCGa > 2:317912/1‑133 (MQ=255) aGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCAGTGAGAACAACAAAGAGATTTCGCTGATCGAACATGCGCAGTTGGATCa > 1:518746/1‑139 (MQ=255) cGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTcgc > 1:111014/1‑81 (MQ=255) cGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTcgc < 2:111014/81‑1 (MQ=255) cGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCAGTGAGAACAACAAAGAGATTTCGCTGATCGAACATGCGCAGTTGGATCACGCt > 1:74499/1‑139 (MQ=255) cGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCAGTGAGAACAACAAAGAGATTTCGCTGATCGAACATGCGCAGTTGGATCACGCt > 1:512332/1‑139 (MQ=255) cGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCAGTGAGAACAACAAAGAGATTTCGCTGATCGAACATGCGCAGTTGGATCACGCt > 1:480250/1‑139 (MQ=255) cGAATCGGCAAGGCTGGCGGCAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCAGCTGTTATGAAAAAATGCTCGCCGCCAGTGAGAACAACAAAGAGATTTCGCTGATCGAACATGCGCAGTTGGATCACGCt > 1:101469/1‑139 (MQ=255) ggcAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCAGTGAGAACAACAAAGAGATTTCGCTGATCGAACATGCGCAGTTGGATCACGCTTTCCATCTCGCCATTTGt < 1:83820/139‑1 (MQ=255) gcAACGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCAGTGAGAACAACAAAGAGATTTCGCTGATCGAACATGCGCAGTTGGATCACGCTTTCCATCTCGCCATTTGTc < 2:101469/139‑1 (MQ=255) aCGCTGGGAGCGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCAGTGAGAACAACAAAGAGATTTCGCTGATCGAACATGCGCAGTTGGATCACGCTTTCCATCTCGCCATTTGTCAgg < 2:480250/139‑1 (MQ=255) | TCGCACGGCTTAATCGGGTGCAGGACACCAGCCCGCTGATCCATCTGTTCAGTACGCAGCCGCGAACGCTGTACGATCTGCTCGACGTTCGCGCATTACTGGAGGGCGAATCGGCAAGGCTGGCGGCAACGCTGGGAACGCAGGCTGATTTTGTTGTGATAACCCGCTGTTATGAAAAAATGCTCGCCGCCAGTGAGAACAACAAAGAGATTTCGCTGATCGAACATGCGCAGTTGGATCACGCTTTCCATCTCGCCATTTGTCAGG > NC_000913/3128483‑3128749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |