| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,293,106 | (G)7→8 | coding (1595/1659 nt) | nrfE → | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,293,099 | 1 | . | G | 100.0% | 109.9 / NA | 29 | W530G (TGG→GGG) | nrfE | heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (15/14); total (15/14) | |||||||||||
CCGTCAACAAATGATGGAACCGTCAATTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCT‑GGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTCAGGTCG > NC_000913/4292969‑4293223 | ccGTCAACAAATGATGGAACCGTCAATTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCT‑gggggggg < 2:1098670/139‑2 (MQ=255) gTCAACAAATGATGGAACCGTCAATTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCT‑ggggggggag > 2:458101/1‑136 (MQ=255) caacaaATGATGGAACCGTCAATTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCT‑ggggggggagga < 1:579567/139‑6 (MQ=255) atgatgGAACCGTCAATTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGAttgttg < 1:375584/139‑1 (MQ=255) tCAATTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGgc > 1:188296/1‑139 (MQ=255) tCAATTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGgc > 2:395480/1‑139 (MQ=255) aTTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCa < 2:357058/139‑1 (MQ=255) aCTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTtct < 1:395480/139‑1 (MQ=255) ggCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACg < 2:567174/139‑1 (MQ=255) gCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGc < 1:458101/139‑1 (MQ=255) ttCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTAcc > 2:747244/1‑139 (MQ=255) ttCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCT‑gg > 1:327792/1‑38 (MQ=255) ttCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCT‑gg < 2:327792/38‑1 (MQ=255) tgtatgtaCAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGC‑GGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTa > 2:963281/1‑117 (MQ=255) tgtatgtaCAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGC‑GGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTa < 1:963281/117‑1 (MQ=255) gtatgtaCAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTActgc > 1:1200735/1‑121 (MQ=255) gtatgtaCAAAGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTActgc < 2:1200735/121‑1 (MQ=255) aGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTtgat < 1:1001528/39‑1 (MQ=255) aGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTtgat > 2:1001528/1‑39 (MQ=255) aGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCa > 2:357537/1‑52 (MQ=255) aGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCa < 1:357537/52‑1 (MQ=255) aGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTa < 1:391049/107‑1 (MQ=255) aGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTa > 2:391049/1‑107 (MQ=255) aGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTAtt < 2:626122/118‑1 (MQ=255) aGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTAtt > 1:626122/1‑118 (MQ=255) aGCGGTGTGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTCa > 2:198650/1‑139 (MQ=255) gtgtGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGtt > 1:94090/1‑122 (MQ=255) gtgtGCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGtt < 2:94090/122‑1 (MQ=255) tgtgCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTCAGGTCg > 1:1074091/1‑139 (MQ=255) tgtgCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTCAGGTCg > 1:250391/1‑139 (MQ=255) tgCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCt < 2:145297/90‑1 (MQ=255) tgCGCTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCt > 1:145297/1‑90 (MQ=255) gcTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGAt < 1:989312/55‑1 (MQ=255) gcTGGATCTGGGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGAt > 2:989312/1‑55 (MQ=255) | CCGTCAACAAATGATGGAACCGTCAATTCGCTGGAACGGCATCCATGACTGGTATGCGGTCATGGGGGAGAAAACTGGGCCGGATCGTTACGCTTTTCGTTTGTATGTACAAAGCGGTGTGCGCTGGATCT‑GGGGGGGAGGATTGTTGATGATTGCGGGCGCATTGTTAAGCGGATGGCGGGGGAAGAAGCGCGATGAATAAAGGGCTTCTCACGCTACTGCTGTTATTTACCTGTTTTGCGCACGCTCAGGTCG > NC_000913/4292969‑4293223 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |