Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913566,2050TC45.1% 21.7 / 140.3 103pseudogene (172/279 nt)exoDpseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related
Reads supporting (aligned to +/- strand):  ref base T (23/33);  new base C (24/22);  total (47/56)
Fisher's exact test for biased strand distribution p-value = 3.20e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 105 total aligned reads displayed.

GGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGC  >  NC_000913/566070‑566334
                                                                                                                                        |                                                                                                                                 
ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCg                                                                                                                                <  2:1199378/139‑1 (MQ=255)
    cccGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCa                                                                                                                            >  1:25041/1‑139 (MQ=255)
      cGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAAt                                                                                                                          <  2:1099135/139‑1 (MQ=255)
      cGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAAt                                                                                                                          <  2:513330/139‑1 (MQ=255)
        gATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCa                                                                                                                        <  1:959593/139‑1 (MQ=255)
            ttatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGAc                                                                                                                    >  1:1013941/1‑139 (MQ=255)
              atCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACAt                                                                                                                  >  2:759558/1‑139 (MQ=255)
               tCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATa                                                                                                                 >  2:808829/1‑139 (MQ=255)
                  tGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCGGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATg                                                                                                              <  1:1199039/139‑1 (MQ=255)
                  tGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATg                                                                                                              <  1:678903/139‑1 (MQ=255)
                   gAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACa                                                                                                                   <  2:337428/133‑1 (MQ=255)
                   gAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGc                                                                                                             >  1:434142/1‑139 (MQ=255)
                   gAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTAGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACAGAATGc                                                                                                             >  1:769750/1‑139 (MQ=255)
                    aGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCa                                                                                                            >  2:447358/1‑139 (MQ=255)
                    aGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCa                                                                                                            <  1:808829/139‑1 (MQ=255)
                    aGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCa                                                                                                            >  2:254751/1‑139 (MQ=255)
                         gCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCt                                                                                                       >  2:496996/1‑139 (MQ=255)
                          cGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACg                                                                                                                      >  1:1219274/1‑123 (MQ=255)
                          cGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCtt                                                                                                      >  1:408384/1‑139 (MQ=255)
                            tCATCGCCATTGCTCCCCAAATACAAAACCAATTTTTGCCAGAGCCTCGCCCAGTCTTTCGATGAACTCCGGCACGATCTCGTCAGCAGCGGCCAATGT‑CTTTACATGCCGCGAAGTCACGCCATAATGCAGGCGTTcc                                                                                                    <  2:427662/139‑2 (MQ=255)
                            tCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACa                                                                                                                   <  2:369864/124‑1 (MQ=255)
                            tCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACa                                                                                                                   >  1:369864/1‑124 (MQ=255)
                            tCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCa                                                                                                    <  1:154472/139‑1 (MQ=255)
                            tCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCa                                                                                                    <  2:434142/139‑1 (MQ=255)
                            tCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCa                                                                                                    <  1:759558/139‑1 (MQ=255)
                             cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCAc                                                                                                   <  2:36721/139‑1 (MQ=255)
                             cATCGCCATTGCACCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTAAATAACGACATAATGCATGCCTTCAc                                                                                                   >  2:1151461/1‑139 (MQ=255)
                              aTCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGTACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACg                                                                                                  <  2:1097392/139‑1 (MQ=255)
                                cGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCt                                                                                                <  2:881597/139‑1 (MQ=255)
                                  ccATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTc                                                                                              <  1:1185620/139‑1 (MQ=255)
                                    aTTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCAt                                                                                            <  1:1149273/139‑1 (MQ=255)
                                      tGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACa                                                                                                                   >  1:152791/1‑114 (MQ=255)
                                      tGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACa                                                                                                                   <  2:152791/114‑1 (MQ=255)
                                      tGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATgc                                                                                          >  1:32748/1‑139 (MQ=255)
                                       gCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATgcg                                                                                         <  2:408384/139‑1 (MQ=255)
                                          ccccAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCgg                                                                                      >  1:677251/1‑139 (MQ=255)
                                            ccAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGc                                                                                                             <  1:1002590/114‑1 (MQ=255)
                                            ccAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGc                                                                                                             >  2:1002590/1‑114 (MQ=255)
                                               aaTACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCAt                                                                                 <  2:507296/139‑1 (MQ=255)
                                               aaTACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCAt                                                                                 <  2:541604/139‑1 (MQ=255)
                                                  aCAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGt                                                                              <  2:769750/139‑1 (MQ=255)
                                                    aaaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTg                                                                            >  1:799207/1‑139 (MQ=255)
                                                     aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCggg                                                                                     >  1:1151710/1‑129 (MQ=255)
                                                     aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCggg                                                                                     <  2:1151710/129‑1 (MQ=255)
                                                     aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCTCC‑ATGTACTTTTCATTCCGCTCAATCa                                                                                                                        <  2:738336/94‑1 (MQ=255)
                                                     aaaCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAACCa                                                                                                                        >  1:738336/1‑94 (MQ=255)
                                                       aCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                                                         <  2:32748/139‑1 (MQ=255)
                                                       aCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                                                         <  1:254751/139‑1 (MQ=255)
                                                            tttCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCtt                                                                                                      <  1:948617/105‑1 (MQ=255)
                                                            tttCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCtt                                                                                                      >  2:948617/1‑105 (MQ=255)
                                                              tCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTAcc                                                                  <  2:1013941/139‑1 (MQ=255)
                                                                aGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAACGTACCAg                                                                >  2:437702/1‑139 (MQ=255)
                                                                  ccAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGc                                                              >  1:19326/1‑139 (MQ=255)
                                                                      tGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCAttt                                                          >  2:835964/1‑137 (MQ=255)
                                                                      tGCCTCGTCCATTTTTTCGATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCAttt                                                          >  1:495610/1‑137 (MQ=255)
                                                                      tGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCt                                                          >  1:887337/1‑139 (MQ=255)
                                                                            gTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTcgc                                                    >  2:948758/1‑139 (MQ=255)
                                                                                 ttttttCGATGAACTACGGCACGATCTCGTCAAAACTCGCC‑ATGTAATTTTCGTCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCAc                                               >  1:274392/1‑139 (MQ=255)
                                                                                   ttttCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCAccc                                             <  1:849756/139‑1 (MQ=255)
                                                                                      tCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACTACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCcaca                                          <  2:887337/139‑1 (MQ=255)
                                                                                      tCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCcaca                                          >  2:945549/1‑139 (MQ=255)
                                                                                       cGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                                                         <  2:673755/107‑1 (MQ=255)
                                                                                       cGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCa                                                                         >  1:673755/1‑107 (MQ=255)
                                                                                        gATGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGTCATTTTTTCGCGTCACCCACTTg                                        <  2:357222/139‑1 (MQ=255)
                                                                                         aTGAACTCCGGCACGATCTCGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGc                                       <  1:406494/139‑1 (MQ=255)
                                                                                         aTGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGc                                       <  2:931622/139‑1 (MQ=255)
                                                                                                 cGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACa                                                                                                                   <  1:508419/55‑1 (MQ=255)
                                                                                                   gCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCAc                             <  1:496996/139‑1 (MQ=255)
                                                                                                        aTCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATgcg                                                                                         >  2:788683/1‑74 (MQ=255)
                                                                                                        aTCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCAc                             <  2:361668/134‑1 (MQ=255)
                                                                                                        aTCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCAc                             >  1:361668/1‑134 (MQ=255)
                                                                                                        aTCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTggg                        <  1:948758/139‑1 (MQ=255)
                                                                                                         tctcGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTc                                                                                                                             <  2:872285/37‑1 (MQ=255)
                                                                                                         tctcGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTc                                                                                                                             >  1:872285/1‑37 (MQ=255)
                                                                                                         tctcGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAgg                                                                                                          >  2:64503/1‑56 (MQ=255)
                                                                                                         tctcGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAgg                                                                                                          <  1:64503/56‑1 (MQ=255)
                                                                                                         tctcGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTcg                                                     >  2:485393/1‑109 (MQ=255)
                                                                                                         tctcGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGc                       >  2:742858/1‑139 (MQ=255)
                                                                                                         tctcGTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCGTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTcg                                                     <  1:485393/109‑1 (MQ=255)
                                                                                                             gTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCAccc                                             <  1:253351/113‑1 (MQ=255)
                                                                                                             gTCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCAccc                                             >  2:253351/1‑113 (MQ=255)
                                                                                                              tCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCAccc                                             <  1:1072806/112‑1 (MQ=255)
                                                                                                              tCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCAccc                                             >  2:1072806/1‑112 (MQ=255)
                                                                                                              tCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCt                                                                                                <  2:853013/61‑1 (MQ=255)
                                                                                                              tCAAAACTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCt                                                                                                >  1:853013/1‑61 (MQ=255)
                                                                                                                aaaaCTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTaa                <  1:1043569/139‑1 (MQ=255)
                                                                                                                 aaaCTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAg               <  1:447358/139‑1 (MQ=255)
                                                                                                                  aaCTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGc              >  2:1102988/1‑139 (MQ=255)
                                                                                                                   aCTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGcc             <  2:25041/139‑1 (MQ=255)
                                                                                                                   aCTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCa                                                                                                            >  2:708945/1‑44 (MQ=255)
                                                                                                                   aCTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCa                                                                                                            <  1:708945/44‑1 (MQ=255)
                                                                                                                   aCTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGct             <  1:657295/139‑2 (MQ=255)
                                                                                                                   aCTCGCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATAAGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGct             >  1:435473/1‑138 (MQ=255)
                                                                                                                       gCC‑ATGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGctgact         >  1:1032599/1‑134 (MQ=255)
                                                                                                                            tGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTAt     <  2:1066239/139‑1 (MQ=255)
                                                                                                                               aCTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATAAGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCTGACTTTAtggc  <  2:435473/139‑4 (MQ=255)
                                                                                                                                     cATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTc                                                      >  1:114702/1‑81 (MQ=255)
                                                                                                                                     cATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTc                                                      <  2:114702/81‑1 (MQ=255)
                                                                                                                                        tCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTgg                         <  1:32510/107‑1 (MQ=255)
                                                                                                                                        tCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTgg                         >  2:32510/1‑107 (MQ=255)
                                                                                                                                        |                                                                                                                                 
GGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCATCTCGTCAAAACTCGCC‑ATGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGATTTTATTGC  >  NC_000913/566070‑566334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑