Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913566,3260TC35.0% 86.5 / 105.2 100pseudogene (51/279 nt)exoDpseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related
Reads supporting (aligned to +/- strand):  ref base T (36/29);  new base C (19/16);  total (55/45)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.08e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 102 total aligned reads displayed.

TGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTACCAACT  >  NC_000913/566193‑566463
                                                                                                                                      |                                                                                                                                         
tGTACTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTAt                                                                                                                                      <  2:1066239/139‑1 (MQ=255)
   aCTTTTCATCCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATAAGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTAtggc                                                                                                                                   <  2:435473/139‑4 (MQ=255)
          atcccGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGaaa                                                                                                                            >  2:950162/4‑139 (MQ=255)
          atcccGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGaaa                                                                                                                            >  2:1108714/4‑139 (MQ=255)
            cccGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAacc                                                                                                                          >  2:38969/2‑139 (MQ=255)
               gCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAaccacc                                                                                                                       <  2:19326/139‑1 (MQ=255)
                 tCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTAt                                                                                                                                      >  1:797016/1‑122 (MQ=255)
                        cGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGaa                                                                                                              >  2:678664/1‑139 (MQ=255)
                          aCATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAAtt                                                                                                            <  2:900455/139‑1 (MQ=255)
                           cATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAActt                                                                                                           >  1:881887/1‑139 (MQ=255)
                                     gCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAaccac                                                                                                                        <  2:363169/116‑1 (MQ=255)
                                     gCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAaccac                                                                                                                        >  1:363169/1‑116 (MQ=255)
                                      ccTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATTTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATccc                                                                                                <  1:835964/139‑1 (MQ=255)
                                      ccTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATccc                                                                                                <  1:963424/139‑1 (MQ=255)
                                         tCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCggg                                                                                             <  1:945549/139‑1 (MQ=255)
                                          cACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGc                                                                                                                                   <  1:51055/100‑1 (MQ=255)
                                          cACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGc                                                                                                                                   >  2:51055/1‑100 (MQ=255)
                                          cACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGa                                                                                            >  1:712908/1‑139 (MQ=255)
                                               ttCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTaa                                                                                       >  2:329498/1‑138 (MQ=255)
                                                    acgcgGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTaaacggg                                                                                  <  2:1032599/138‑7 (MQ=255)
                                                       cgGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTAtt                                                                                >  1:112457/1‑139 (MQ=255)
                                                         ggTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTaaacgggcattt                                                                             <  2:799207/139‑12 (MQ=255)
                                                         ggTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTaaacgggcattt                                                                             <  1:38969/139‑12 (MQ=255)
                                                         ggTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTaaacgggcattt                                                                             >  2:423621/1‑128 (MQ=255)
                                                         ggTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTaaacgggcattt                                                                             >  2:1210932/1‑128 (MQ=255)
                                                         ggTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTaaacgg                                                                                   <  1:1024223/133‑6 (MQ=255)
                                                         ggTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTaaacgg                                                                                   >  2:1024223/1‑128 (MQ=255)
                                                         ggTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCgg                                                                                              >  2:1205831/1‑122 (MQ=255)
                                                         ggTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCgg                                                                                              <  1:1205831/122‑1 (MQ=255)
                                                         ggTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGcc                                                                             >  1:62567/1‑139 (MQ=255)
                                                         ggTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGcc                                                                             >  2:818210/1‑139 (MQ=255)
                                                         ggTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGcc                                                                             >  1:419293/1‑139 (MQ=255)
                                                           tCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTaaacgggcatttca                                                                           >  1:180466/1‑126 (MQ=255)
                                                                    gCAAAGTACCAGGCGTCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTACCTCGAAACCACCGAGCCGGAATTTCGTGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                  >  1:751061/1‑139 (MQ=255)
                                                                    gCAAAGTACCAGGCATTTTTTCGCGTCTCCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTAtg                                                                                                                                     <  2:877931/72‑2 (MQ=255)
                                                                    gCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTa                                                                                                                                       <  2:921310/70‑1 (MQ=255)
                                                                    gCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTa                                                                                                                                       >  1:921310/1‑70 (MQ=255)
                                                                    gCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTAtg                                                                                                                                     >  1:877931/1‑71 (MQ=255)
                                                                    gCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATg                                                                                                       <  2:881257/102‑1 (MQ=255)
                                                                    gCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATg                                                                                                       >  1:881257/1‑102 (MQ=255)
                                                                    gCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCggg                                                                                             >  2:106105/1‑112 (MQ=255)
                                                                    gCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCggg                                                                                             <  2:850844/112‑1 (MQ=255)
                                                                    gCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCggg                                                                                             <  1:106105/112‑1 (MQ=255)
                                                                    gCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCggg                                                                                             >  1:850844/1‑112 (MQ=255)
                                                                    gCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                  >  1:886009/1‑139 (MQ=255)
                                                                    gCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                  >  1:1191139/1‑139 (MQ=255)
                                                                    gCAAAGTACCAGGCATCTTTGCGCGTCACCCACATGCTGTACTGCA‑CCTGTGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAAGCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                  <  2:608703/139‑1 (MQ=255)
                                                                         gTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATg                                                                                                       <  2:1183496/97‑1 (MQ=255)
                                                                         gTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATg                                                                                                       >  1:1183496/1‑97 (MQ=255)
                                                                                    cTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCg                                                                            >  1:316408/1‑113 (MQ=255)
                                                                                    cTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCg                                                                            <  2:316408/113‑1 (MQ=255)
                                                                                    cTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                  <  1:38175/123‑1 (MQ=255)
                                                                                    cTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                  >  2:38175/1‑123 (MQ=255)
                                                                                          gcgTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTa                                                                                                                                       >  1:332917/1‑48 (MQ=255)
                                                                                          gcgTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTa                                                                                                                                       <  2:332917/48‑1 (MQ=255)
                                                                                           cgTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTa                                           <  2:751061/139‑1 (MQ=255)
                                                                                              cACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                  >  1:1159032/1‑113 (MQ=255)
                                                                                              cACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                  <  2:1159032/113‑1 (MQ=255)
                                                                                                        cTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCg                              >  2:169610/1‑139 (MQ=255)
                                                                                                           tACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGcc                                                                                                                                  >  2:371704/1‑36 (MQ=255)
                                                                                                           tACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGcc                                                                                                                                  <  1:371704/36‑1 (MQ=255)
                                                                                                           tACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATg                                                                                                       >  1:916540/1‑63 (MQ=255)
                                                                                                           tACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATg                                                                                                       <  2:916540/63‑1 (MQ=255)
                                                                                                           tACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAAc                           >  2:633522/1‑139 (MQ=255)
                                                                                                           tACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAAc                           >  2:398075/1‑139 (MQ=255)
                                                                                                            aCTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAAcg                          <  2:62567/139‑1 (MQ=255)
                                                                                                              tGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAAcgcg                        <  1:633522/139‑1 (MQ=255)
                                                                                                              tGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAAcgcg                        <  1:818210/139‑1 (MQ=255)
                                                                                                               gCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGaa                                                                                                     <  1:1089392/61‑1 (MQ=255)
                                                                                                               gCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGaa                                                                                                     >  2:1089392/1‑61 (MQ=255)
                                                                                                               gCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGaa                                                                                                     <  2:476915/61‑1 (MQ=255)
                                                                                                               gCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGaa                                                                                                     >  1:476915/1‑61 (MQ=255)
                                                                                                                cA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCgg                                                        >  1:435315/1‑105 (MQ=255)
                                                                                                                cA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCgg                                                        <  2:435315/105‑1 (MQ=255)
                                                                                                                cA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCa                      >  2:1119992/1‑139 (MQ=255)
                                                                                                                cA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCa                      <  2:1191139/139‑1 (MQ=255)
                                                                                                                   ccTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGGGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCAtt                    >  2:120457/1‑139 (MQ=255)
                                                                                                                     tGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTAc                  <  2:112457/139‑1 (MQ=255)
                                                                                                                      gggCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                  <  1:777339/90‑1 (MQ=255)
                                                                                                                      gggCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                  >  2:777339/1‑90 (MQ=255)
                                                                                                                      gggCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGc                                                    >  1:989907/1‑104 (MQ=255)
                                                                                                                      gggCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTAt                                          <  2:1161844/114‑1 (MQ=255)
                                                                                                                      gggCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTAt                                          >  1:1161844/1‑114 (MQ=255)
                                                                                                                         ccATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACtggt              >  2:966147/1‑139 (MQ=255)
                                                                                                                         ccATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACtggt              >  2:610104/1‑139 (MQ=255)
                                                                                                                          cATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACtggtt             <  1:398075/139‑1 (MQ=255)
                                                                                                                            tGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATccc                                                                                                >  1:225205/1‑54 (MQ=255)
                                                                                                                            tGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATccc                                                                                                <  2:225205/54‑1 (MQ=255)
                                                                                                                            tGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGc                                                    >  2:796334/1‑98 (MQ=255)
                                                                                                                            tGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGc                                                    <  1:796334/98‑1 (MQ=255)
                                                                                                                             gTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACtggttggt          >  2:679936/1‑139 (MQ=255)
                                                                                                                              tAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTggttggtt         >  1:879576/1‑139 (MQ=255)
                                                                                                                                 gCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAAcgcg                        <  1:741879/121‑1 (MQ=255)
                                                                                                                                 gCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAAcgcg                        >  2:741879/1‑121 (MQ=255)
                                                                                                                                 gCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTAcc      >  2:1196349/1‑139 (MQ=255)
                                                                                                                                 gCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTAcc      >  2:435741/1‑139 (MQ=255)
                                                                                                                                    gATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTACCAAc   <  2:879576/139‑1 (MQ=255)
                                                                                                                                     aTTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTACCAACt  <  1:678664/139‑1 (MQ=255)
                                                                                                                                      ttttATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAAcgcg                        <  2:202469/116‑1 (MQ=255)
                                                                                                                                      ttttATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAAcgcg                        >  1:202469/1‑116 (MQ=255)
                                                                                                                                      |                                                                                                                                         
TGTACTTTTCATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTACCAACT  >  NC_000913/566193‑566463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑