Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	566,332	0	T	G	30.1%	145.6 / 112.5	93	pseudogene (45/279 nt)	exoD	pseudogene, DLP12 prophage, phage‑type exonuclease family,Phage or Prophage Related
Reads supporting (aligned to +/- strand):  ref base T (36/29);  new base G (16/12);  total (52/41)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.20e-01
Rejected as consensus: Frequency below/above cutoff threshold.

ATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTACCAACTTGTACCA  >  NC_000913/566203‑566470                                                                                                                                   |                                                                                                                                           atcccGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGaaa                                                                                                                                   >  2:1108714/4‑139 (MQ=255) atcccGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGaaa                                                                                                                                   >  2:950162/4‑139 (MQ=255)   cccGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAacc                                                                                                                                 >  2:38969/2‑139 (MQ=255)      gCTCAATCACGACATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAaccacc                                                                                                                              <  2:19326/139‑1 (MQ=255)               cGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGaa                                                                                                                     >  2:678664/1‑139 (MQ=255)                 aCATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAAtt                                                                                                                   <  2:900455/139‑1 (MQ=255)                  cATAATGCAGGCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAActt                                                                                                                  >  1:881887/1‑139 (MQ=255)                            gCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAaccac                                                                                                                               <  2:363169/116‑1 (MQ=255)                            gCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAaccac                                                                                                                               >  1:363169/1‑116 (MQ=255)                            gCCTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATcc                                                                                                        >  2:1094974/1‑139 (MQ=255)                             ccTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATTTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATccc                                                                                                       <  1:835964/139‑1 (MQ=255)                             ccTTCACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATccc                                                                                                       <  1:963424/139‑1 (MQ=255)                                tCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCggg                                                                                                    <  1:945549/139‑1 (MQ=255)                                 cACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGc                                                                                                                                          >  2:51055/1‑100 (MQ=255)                                 cACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGc                                                                                                                                          <  1:51055/100‑1 (MQ=255)                                 cACGCTTCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGa                                                                                                   >  1:712908/1‑139 (MQ=255)                                      ttCATACGCGGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTaa                                                                                              >  2:329498/1‑138 (MQ=255)                                           acgcgGGTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTaaacggg                                                                                         <  2:1032599/138‑7 (MQ=255)                                              cgGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCACCCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTAtt                                                                                       >  1:112457/1‑139 (MQ=255)                                                ggTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTaaacgggcattt                                                                                    >  2:423621/1‑128 (MQ=255)                                                ggTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTaaacgggcattt                                                                                    <  1:38969/139‑12 (MQ=255)                                                ggTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTaaacgggcattt                                                                                    <  2:799207/139‑12 (MQ=255)                                                ggTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTaaacgggcattt                                                                                    >  2:1210932/1‑128 (MQ=255)                                                ggTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTaaacgg                                                                                          <  1:1024223/133‑6 (MQ=255)                                                ggTCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTaaacgg                                                                                          >  2:1024223/1‑128 (MQ=255)                                                ggTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCgg                                                                                                     >  2:1205831/1‑122 (MQ=255)                                                ggTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCgg                                                                                                     <  1:1205831/122‑1 (MQ=255)                                                ggTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGcc                                                                                    >  1:62567/1‑139 (MQ=255)                                                ggTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGcc                                                                                    >  1:419293/1‑139 (MQ=255)                                                ggTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGcc                                                                                    >  2:818210/1‑139 (MQ=255)                                                  tCATAGTTGGCAAAGTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATCCCGGGAGGTaaacgggcatttca                                                                                  >  1:180466/1‑126 (MQ=255)                                                           gCAAAGTACCAGGCGTCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTACCTCGAAACCACCGAGCCGGAATTTCGTGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                         >  1:751061/1‑139 (MQ=255)                                                           gCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATg                                                                                                              <  2:881257/102‑1 (MQ=255)                                                           gCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATg                                                                                                              >  1:881257/1‑102 (MQ=255)                                                           gCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCggg                                                                                                    >  2:106105/1‑112 (MQ=255)                                                           gCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCggg                                                                                                    <  2:850844/112‑1 (MQ=255)                                                           gCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCggg                                                                                                    <  1:106105/112‑1 (MQ=255)                                                           gCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCggg                                                                                                    >  1:850844/1‑112 (MQ=255)                                                           gCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                         >  1:886009/1‑139 (MQ=255)                                                           gCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                         >  1:1191139/1‑139 (MQ=255)                                                           gCAAAGTACCAGGCATCTTTGCGCGTCACCCACATGCTGTACTGCA‑CCTGTGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAAGCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                         <  2:608703/139‑1 (MQ=255)                                                                gTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATg                                                                                                              <  2:1183496/97‑1 (MQ=255)                                                                gTACCAGGCATTTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATg                                                                                                              >  1:1183496/1‑97 (MQ=255)                                                                           cTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCg                                                                                   >  1:316408/1‑113 (MQ=255)                                                                           cTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCg                                                                                   <  2:316408/113‑1 (MQ=255)                                                                           cTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                         <  1:38175/123‑1 (MQ=255)                                                                           cTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                         >  2:38175/1‑123 (MQ=255)                                                                                  cgTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTa                                                  <  2:751061/139‑1 (MQ=255)                                                                                     cACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                         <  2:1159032/113‑1 (MQ=255)                                                                                     cACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                         >  1:1159032/1‑113 (MQ=255)                                                                                               cTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCg                                     >  2:169610/1‑139 (MQ=255)                                                                                                  tACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGcc                                                                                                                                         <  1:371704/36‑1 (MQ=255)                                                                                                  tACTGCA‑CCTGGGCCATGTAAGCTGACTTTATGGcc                                                                                                                                         >  2:371704/1‑36 (MQ=255)                                                                                                  tACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATg                                                                                                              >  1:916540/1‑63 (MQ=255)                                                                                                  tACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATg                                                                                                              <  2:916540/63‑1 (MQ=255)                                                                                                  tACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAAc                                  >  2:633522/1‑139 (MQ=255)                                                                                                  tACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAAc                                  >  2:398075/1‑139 (MQ=255)                                                                                                   aCTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAAcg                                 <  2:62567/139‑1 (MQ=255)                                                                                                     tGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAAcgcg                               <  1:633522/139‑1 (MQ=255)                                                                                                     tGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAAcgcg                               <  1:818210/139‑1 (MQ=255)                                                                                                      gCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGaa                                                                                                            >  2:1089392/1‑61 (MQ=255)                                                                                                      gCA‑CCTGGGCCATGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGaa                                                                                                            <  1:1089392/61‑1 (MQ=255)                                                                                                      gCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGaa                                                                                                            >  1:476915/1‑61 (MQ=255)                                                                                                      gCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGaa                                                                                                            <  2:476915/61‑1 (MQ=255)                                                                                                       cA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCgg                                                               >  1:435315/1‑105 (MQ=255)                                                                                                       cA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCgg                                                               <  2:435315/105‑1 (MQ=255)                                                                                                       cA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCa                             <  2:1191139/139‑1 (MQ=255)                                                                                                       cA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCa                             >  2:1119992/1‑139 (MQ=255)                                                                                                          ccTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGGGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCAtt                           >  2:120457/1‑139 (MQ=255)                                                                                                            tGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTAc                         <  2:112457/139‑1 (MQ=255)                                                                                                             gggCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                         >  2:777339/1‑90 (MQ=255)                                                                                                             gggCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGc                                                                         <  1:777339/90‑1 (MQ=255)                                                                                                             gggCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGc                                                           <  2:989907/104‑1 (MQ=255)                                                                                                             gggCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGc                                                           >  1:989907/1‑104 (MQ=255)                                                                                                             gggCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTAt                                                 <  2:1161844/114‑1 (MQ=255)                                                                                                             gggCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTAt                                                 >  1:1161844/1‑114 (MQ=255)                                                                                                                ccATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACtggt                     >  2:610104/1‑139 (MQ=255)                                                                                                                ccATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACtggt                     >  2:966147/1‑139 (MQ=255)                                                                                                                 cATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACtggtt                    <  1:398075/139‑1 (MQ=255)                                                                                                                   tGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATccc                                                                                                       <  2:225205/54‑1 (MQ=255)                                                                                                                   tGTAAGCTGACTTTATGGCCTCGAAACCACCGAGCCGGAACTTCATGAAATccc                                                                                                       >  1:225205/1‑54 (MQ=255)                                                                                                                   tGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGc                                                           >  2:796334/1‑98 (MQ=255)                                                                                                                   tGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGc                                                           <  1:796334/98‑1 (MQ=255)                                                                                                                    gTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACtggttggt                 >  2:679936/1‑139 (MQ=255)                                                                                                                     tAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTggttggtt                >  1:879576/1‑139 (MQ=255)                                                                                                                        gCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAAcgcg                               >  2:741879/1‑121 (MQ=255)                                                                                                                        gCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAAcgcg                               <  1:741879/121‑1 (MQ=255)                                                                                                                        gCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTAcc             >  2:1196349/1‑139 (MQ=255)                                                                                                                        gCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTAcc             >  2:435741/1‑139 (MQ=255)                                                                                                                           gATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTACCAAc          <  2:879576/139‑1 (MQ=255)                                                                                                                            aTTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTACCAACt         <  1:678664/139‑1 (MQ=255)                                                                                                                             ttttATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAAcgcg                               >  1:202469/1‑116 (MQ=255)                                                                                                                             ttttATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAAcgcg                               <  2:202469/116‑1 (MQ=255)                                                                                                                                   tGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTACCAACTTGTACCa  >  1:60194/1‑139 (MQ=255)                                                                                                                                   |                                                                                                                                           ATTCCGCTCAATCACGACATAATGCAGGCCTTCACGCTTCATGCGCGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCGCGTCACCCACATGCTGTACTGCA‑CCTGGGCCATGTAAGCCGATTTTATTGCCTCGAAACCACCGAGCCGGAATTTCATGAAATCCCGGGAGGTACGAGTATTGCCGGAAGCGTGGCCTGTATCCGGATGCAGAGTCTTATCCGTGGAAATCGAACGCGCATTACTGGTTGGTTACCAACTTGTACCA  >  NC_000913/566203‑566470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑