Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,170,674 C→T P1097P (CCG→CCA)  mfd ← transcription‑repair coupling factor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,170,6740CT100.0% 149.6 / NA 44P1097P (CCG→CCA) mfdtranscription‑repair coupling factor
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (19/25);  total (19/25)

CACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAG  >  NC_000913/1170544‑1170808
                                                                                                                                  |                                                                                                                                      
cACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAAc                                                                                                                                >  1:475669/1‑139 (MQ=255)
  cGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGt                                                                                                                              >  2:445541/1‑139 (MQ=255)
    cATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGa                                                                                                                            <  1:1237655/139‑1 (MQ=255)
            ggCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTtctc                                                                                                                    <  2:6014/139‑1 (MQ=255)
                     aTTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTc                                                                                                           >  1:172290/1‑139 (MQ=255)
                       tCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGa                                                                                                         <  1:445541/139‑1 (MQ=255)
                          aTACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCa                                                                                                      >  1:1066517/1‑139 (MQ=255)
                            aCGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCAcc                                                                                                    <  2:172290/139‑1 (MQ=255)
                             cgcgTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCAccc                                                                                                   >  1:675800/1‑139 (MQ=255)
                                   ttCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCtt                                                                                             >  1:960935/1‑139 (MQ=255)
                                   ttCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCtt                                                                                             >  1:855667/1‑139 (MQ=255)
                                        ctcactcaAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCaa                                                                                                               <  2:193875/116‑1 (MQ=255)
                                        ctcactcaAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCaa                                                                                                               >  1:193875/1‑116 (MQ=255)
                                        ctcactcaAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCa                                                                                        <  2:872548/139‑1 (MQ=255)
                                          cactcaAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCAtt                                                                                      <  2:1207120/139‑1 (MQ=255)
                                                   ccTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAg                                                                             <  1:264393/139‑1 (MQ=255)
                                                     tGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGAt                                                                                                                                    >  1:324267/1‑82 (MQ=255)
                                                     tGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGAt                                                                                                                                    <  2:324267/82‑1 (MQ=255)
                                                     tGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCAcc                                                                                                    <  2:1092988/114‑1 (MQ=255)
                                                     tGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCAcc                                                                                                    >  1:1092988/1‑114 (MQ=255)
                                                       aaTAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGcc                                                                                               <  1:978214/117‑1 (MQ=255)
                                                       aaTAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGcc                                                                                               >  2:978214/1‑117 (MQ=255)
                                                                 aGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAGCTTCCTGATCCCCa                                                               >  2:912685/1‑139 (MQ=255)
                                                                 aGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAGCTTCCTGATCCCCa                                                               >  1:687670/1‑139 (MQ=255)
                                                                    cgcgTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAGCTTCCTGATCCCCAGtt                                                            >  2:372490/1‑139 (MQ=255)
                                                                      cgTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCAt                                                                                       <  1:1047828/110‑1 (MQ=255)
                                                                      cgTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCAt                                                                                       >  2:1047828/1‑110 (MQ=255)
                                                                                 cAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCt                                                                                  >  2:116403/1‑104 (MQ=255)
                                                                                 cAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCt                                                                                  <  1:116403/104‑1 (MQ=255)
                                                                                    ggCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGgcg                                            <  2:509842/139‑1 (MQ=255)
                                                                                        gTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCAcc                                                                                                    >  1:893448/1‑79 (MQ=255)
                                                                                        gTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCAcc                                                                                                    <  2:893448/79‑1 (MQ=255)
                                                                                         tAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGAc                                       <  2:1189258/139‑1 (MQ=255)
                                                                                            tgctgcGGCTGTTTTTGCAGCAAACCAATCAGCCAGGCTGGATTAACGTGATTCTGCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACggg                                    <  2:184167/139‑1 (MQ=255)
                                                                                            tgctgcGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACggg                                    <  1:372490/139‑1 (MQ=255)
                                                                                            taagagacaggTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACggg                                    <  1:242569/129‑1 (MQ=255)
                                                                                              ctgcGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCAt                                                                                       >  2:233511/1‑86 (MQ=255)
                                                                                              ctgcGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCAt                                                                                       <  1:233511/86‑1 (MQ=255)
                                                                                              ctgcGGCTGTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCGGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCa                                  <  1:912685/139‑1 (MQ=255)
                                                                                                      gTTTTTGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCcag                          <  2:392713/139‑1 (MQ=255)
                                                                                                       tttttGCAGCAAACCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCcagc                         <  2:855667/139‑1 (MQ=255)
                                                                                                                 aaaCCAATCAACCAGGCTGGATTAACGTGCTTCTTCTCGGCACATTCGATCACCCCGCCCTTCTCATTACCTTCCAGCTTCATGATCCCCAGTTTCTGCGCTTGCTGGCGCCGTCGGGCAATATCtagcctgtatctta               >  2:242569/1‑129 (MQ=255)
                                                                                                                 aaaCCAATCAACCAGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAGTATCCAGCAGGGTAcgcg               <  2:687670/139‑1 (MQ=255)
                                                                                                                              aGGCTGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGgcag  <  2:191356/139‑1 (MQ=255)
                                                                                                                                  |                                                                                                                                      
CACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAGGCGCGTCGGACCATCAAGGCGGTAATGCTGCGGCTGTTTTTGCAGCAAACCAATCAACCAGGCCGGATTAACGTGATTCTTCTCGGCAAATTCGATCACCCCGCCTTTCTCATTACCTTCCAGCTTCCTGATCCCCAGTTTCTGCGCTTGCTGGCGCAGACGGGCAATATCCAGCAGGGTACGCGCCGGATCTGGCAG  >  NC_000913/1170544‑1170808

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑