Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,065,209	C→T	P392S (CCT→TCT)	yccE →	uncharacterized protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,065,209	0	C	T	100.0%	312.5 / NA	89	P392S (CCT→TCT)	yccE	uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (45/44);  total (45/44)

CATTTGCTCATTATTTATTGTTAATAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTCCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCATTGTTATTAGTCTCACACTTTTTTAT  >  NC_000913/1065076‑1065343                                                                                                                                      |                                                                                                                                       cATTTGCTCATTATTTATTGTTAATAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGaa                                                                                                                                   >  2:335792/1‑139 (MQ=255)           ttatttatTGTTAATAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTc                                                                                                                         <  1:824590/139‑1 (MQ=255)           ttatttatTGTTAATAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTc                                                                                                                         >  1:1143013/1‑139 (MQ=255)                 attGTTAATAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCtt                                                                                                                   <  2:1143013/139‑1 (MQ=255)                  ttGTTAATAGTAATGTGTCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAATACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTa                                                                                                                  <  2:454272/139‑1 (MQ=255)                    gTTAATAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACa                                                                                                                >  2:165899/1‑139 (MQ=255)                     ttAATAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTc                                                                                                                         >  1:906682/1‑129 (MQ=255)                     ttAATAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTc                                                                                                                         <  2:906682/129‑1 (MQ=255)                      tAATAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGa                                                                                                                                    <  2:641045/117‑1 (MQ=255)                      tAATAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGa                                                                                                                                    >  1:641045/1‑117 (MQ=255)                      tAATAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAg                                                                                                              >  2:799542/1‑139 (MQ=255)                      tAATAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAg                                                                                                              >  1:1192066/1‑139 (MQ=255)                         tAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTa                                                                                                           <  2:1084561/139‑1 (MQ=255)                         tAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTa                                                                                                           <  1:464910/139‑1 (MQ=255)                            tAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAAc                                                                                                        >  2:10442/1‑139 (MQ=255)                               tgtgGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAAt                                                                                                     <  1:1123292/139‑1 (MQ=255)                               tgtgGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAAt                                                                                                     >  2:1123292/1‑139 (MQ=255)                               tgtgGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAAt                                                                                                     >  2:1230529/1‑139 (MQ=255)                               tgtgGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAAt                                                                                                     >  2:979077/1‑139 (MQ=255)                               tgtgGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAAt                                                                                                     <  1:335792/139‑1 (MQ=255)                                 tgGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATaa                                                                                                   >  1:365064/1‑139 (MQ=255)                                   gCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTc                                                                                                                         >  2:1149572/1‑115 (MQ=255)                                   gCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTc                                                                                                                         <  1:1149572/115‑1 (MQ=255)                                      tCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGaaa                                                                                              >  2:221145/1‑139 (MQ=255)                                          tctcCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAaatgaa                                                                                          >  2:1213606/1‑139 (MQ=255)                                            tcCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAaatgaatg                                                                                        <  1:165899/139‑1 (MQ=255)                                                      atgaatCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTc                                                                                                                         <  2:852965/96‑1 (MQ=255)                                                      atgaatCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTc                                                                                                                         >  1:852965/1‑96 (MQ=255)                                                      atgaatCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGa                                                                              <  2:1192066/139‑1 (MQ=255)                                                      atgaatCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGa                                                                              <  1:1213606/139‑1 (MQ=255)                                                             cTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCtt                                                                                                                   <  1:338370/95‑1 (MQ=255)                                                             cTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCtt                                                                                                                   >  2:338370/1‑95 (MQ=255)                                                             cTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTa                                                                       <  1:979077/139‑1 (MQ=255)                                                               tttCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTaaa                                                                                                         >  1:318362/1‑103 (MQ=255)                                                               tttCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTaaa                                                                                                         <  2:318362/103‑1 (MQ=255)                                                                ttCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACa                                                                                                       >  1:492316/1‑104 (MQ=255)                                                                ttCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACa                                                                                                       <  2:492316/104‑1 (MQ=255)                                                                 tCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTc                                                                                                                         <  2:389336/85‑1 (MQ=255)                                                                 tCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTc                                                                                                                         >  1:389336/1‑85 (MQ=255)                                                                 tCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATc                                                                   >  2:243269/1‑139 (MQ=255)                                                                 tCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATc                                                                   >  2:441987/1‑139 (MQ=255)                                                                     cAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTa                                                               >  2:556342/1‑139 (MQ=255)                                                                         tGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCg                                                                  >  2:595151/1‑132 (MQ=255)                                                                         tGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCg                                                                  <  1:595151/132‑1 (MQ=255)                                                                              aTCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTa                                                      <  1:4457/139‑1 (MQ=255)                                                                               tCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTaa                                                     <  1:441987/139‑1 (MQ=255)                                                                                  tGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGa                                                                              <  1:562067/111‑1 (MQ=255)                                                                                  tGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGa                                                                              >  2:562067/1‑111 (MQ=255)                                                                                        tGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCg                                                                               >  1:877610/1‑104 (MQ=255)                                                                                        tGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCg                                                                               >  1:379842/1‑104 (MQ=255)                                                                                        tGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCg                                                                               <  2:379842/104‑1 (MQ=255)                                                                                        tGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAgg                                            >  1:585881/1‑139 (MQ=255)                                                                                        tGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGATCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCg                                                                               <  2:877610/104‑1 (MQ=255)                                                                                           ttATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTa                                                                                                           >  2:944622/1‑73 (MQ=255)                                                                                           ttATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTa                                                                                                           <  1:944622/73‑1 (MQ=255)                                                                                            tATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCata                                        <  2:585881/139‑1 (MQ=255)                                                                                              tttAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCg                                                                  >  1:357523/1‑111 (MQ=255)                                                                                              tttAATGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATg                                      >  1:211144/1‑139 (MQ=255)                                                                                              tttAATGAACACTCGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCg                                                                  <  2:357523/111‑1 (MQ=255)                                                                                                   tGAACACTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTaaa                                 >  2:214821/1‑139 (MQ=255)                                                                                                        acTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCaa                                                                                   <  2:608387/84‑1 (MQ=255)                                                                                                        acTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCaa                                                                                   >  1:608387/1‑84 (MQ=255)                                                                                                        acTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGc                                           >  1:536243/1‑124 (MQ=255)                                                                                                        acTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGc                                           <  2:536243/124‑1 (MQ=255)                                                                                                        acTGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCa                            <  1:243269/139‑1 (MQ=255)                                                                                                          tGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCg                                                                  <  2:66792/99‑1 (MQ=255)                                                                                                          tGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCg                                                                  >  1:66792/1‑99 (MQ=255)                                                                                                          tGGCAATCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCa                            >  2:729805/1‑137 (MQ=255)                                                                                                          tGGCAATCATTATGACGTTGACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCa                            <  1:729805/137‑1 (MQ=255)                                                                                                              aaTCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCATTGtta                      <  1:214821/139‑1 (MQ=255)                                                                                                               aTCATTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCATTGttat                     <  2:365064/139‑1 (MQ=255)                                                                                                                  aTTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCaa                                               >  2:153359/1‑110 (MQ=255)                                                                                                                  aTTATGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCaa                                               <  1:153359/110‑1 (MQ=255)                                                                                                                      tGACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCATTGTTATTAGtctc              <  1:556342/139‑1 (MQ=255)                                                                                                                       gACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAACAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGc                                           <  2:476034/109‑1 (MQ=255)                                                                                                                       gACGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAACAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGc                                           >  1:476034/1‑109 (MQ=255)                                                                                                                        aCGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGaa                                                                                               >  2:7470/1‑56 (MQ=255)                                                                                                                        aCGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGaa                                                                                               <  1:7470/56‑1 (MQ=255)                                                                                                                        aCGTTTACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCATTGTTATTAGTCTcac            <  1:799542/139‑1 (MQ=255)                                                                                                                            ttACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAGACCATTGTTATTAGTCTCACACt         >  1:692015/1‑138 (MQ=255)                                                                                                                            ttACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCATTGTTATTAGTCTCACACt         <  2:692015/138‑1 (MQ=255)                                                                                                                             tACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCt                                    <  1:1200954/110‑1 (MQ=255)                                                                                                                             tACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCt                                    >  2:1200954/1‑110 (MQ=255)                                                                                                                             tACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTaaa                                 >  2:911967/1‑113 (MQ=255)                                                                                                                             tACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTaaa                                 <  1:911967/113‑1 (MQ=255)                                                                                                                             tACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCa                            <  1:1133931/118‑1 (MQ=255)                                                                                                                             tACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCa                            >  2:1133931/1‑118 (MQ=255)                                                                                                                             tACCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCATTGTTATTAGTCTCACACttt       >  1:861947/1‑139 (MQ=255)                                                                                                                              aCCTCCCTTCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCATTGTTATTAGTCTCACACtttt      >  1:574513/1‑139 (MQ=255)                                                                                                                                ctcccttcTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCATTGTTATTAGTCTCACACtttttt    <  1:819743/139‑1 (MQ=255)                                                                                                                                 tcccttcTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCATTGTTATTAGTCTCACACTTTTTTa   <  2:861947/139‑1 (MQ=255)                                                                                                                                  cccttcTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCAt                           >  2:85977/1‑114 (MQ=255)                                                                                                                                  cccttcTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCAt                           <  1:85977/114‑1 (MQ=255)                                                                                                                                  cccttcTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCATTGTTATTAGTCTCACACTTTTTTAt  >  1:830359/1‑139 (MQ=255)                                                                                                                                      |                                                                                                                                       CATTTGCTCATTATTTATTGTTAATAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACGTTTACCTCCCTCCTGAACTTTTTGCTCAGGCTTACAAGTTAAACAATAAGGAAATGAATGCGCAACTCGACTATTTAAATCGTTATGCAATTTAATGGCAAAGGCATATGCTAAAAACCATTGTTATTAGTCTCACACTTTTTTAT  >  NC_000913/1065076‑1065343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑