Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 293,780 (A)7→6 coding (139/699 nt) yagL ← CP4‑6 prophage, DNA‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913293,7740A.100.0% 394.0 / NA 95coding (145/699 nt)yagLCP4‑6 prophage, DNA‑binding protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (56/39);  total (56/39)

GCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTGGTAAAGTAGTATTT  >  NC_000913/293639‑293908
                                                                                                                                       |                                                                                                                                      
gCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTaaaa                                                                                                                                     >  2:870654/1‑139 (MQ=255)
gCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTaaaa                                                                                                                                     >  2:1172607/1‑139 (MQ=255)
         caacCTCTTTAATATCTACCTGCTCGATCACAACTTGTTCAGGTAGAATATTAAATTTTTGGCTTATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGc                                                                                                                           <  2:865996/139‑1 (MQ=255)
           acCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCAt                                                                                                                         >  1:1465544/1‑139 (MQ=255)
                   aaTATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCa                                                                                                                 <  1:1172607/139‑1 (MQ=255)
                   aaTATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCa                                                                                                                 <  1:1389940/139‑1 (MQ=255)
                          aCCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGgt                                                                                                          >  2:484047/1‑139 (MQ=255)
                               cTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTg                                                                                                                      <  1:137714/122‑1 (MQ=255)
                               cTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTg                                                                                                                      >  2:137714/1‑122 (MQ=255)
                               cTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCAt                                                                                                     >  2:298325/1‑139 (MQ=255)
                                   aTCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAat                                                                                                 >  2:566137/1‑139 (MQ=255)
                                   aTCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAat                                                                                                 >  1:343330/1‑139 (MQ=255)
                                             gTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGa                                                                                       <  2:264691/139‑1 (MQ=255)
                                              ttCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATg                                                                                                                   >  1:870913/1‑110 (MQ=255)
                                              ttCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATg                                                                                                                   <  2:870913/110‑1 (MQ=255)
                                              ttCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTg                                                                                        >  1:524174/1‑137 (MQ=255)
                                              ttCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTg                                                                                        <  2:524174/137‑1 (MQ=255)
                                              ttCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGa                                                                                       <  1:1470994/138‑1 (MQ=255)
                                              ttCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGa                                                                                       >  2:1470994/1‑138 (MQ=255)
                                              ttCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGAt                                                                                      >  2:1163600/1‑139 (MQ=255)
                                              ttCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGAt                                                                                      >  1:229681/1‑139 (MQ=255)
                                                cAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATAc                                                                                    <  1:484047/139‑1 (MQ=255)
                                                       aaTATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCa                                                                                                                 <  2:151915/103‑1 (MQ=255)
                                                       aaTATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCa                                                                                                                 >  1:151915/1‑103 (MQ=255)
                                                       aaTATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGaata                                                                             >  2:412092/1‑139 (MQ=255)
                                                       aaTATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTACTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGaata                                                                             >  2:1112286/1‑139 (MQ=255)
                                                             aaaTTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCa                                                                       >  1:1535548/1‑139 (MQ=255)
                                                             aaaTTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCa                                                                       >  1:35143/1‑139 (MQ=255)
                                                                 ttttGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCAtttt                                                                   >  2:174106/1‑139 (MQ=255)
                                                                   ttGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTg                                                                                        >  1:500457/1‑116 (MQ=255)
                                                                   ttGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTg                                                                                        <  2:500457/116‑1 (MQ=255)
                                                                   ttGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGc                                                                 >  1:469009/1‑139 (MQ=255)
                                                                   ttGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGc                                                                 >  1:53660/1‑139 (MQ=255)
                                                                   ttGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGc                                                                 >  1:111701/1‑139 (MQ=255)
                                                                           tctcAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATaaaaaa                                                         <  2:111701/139‑1 (MQ=255)
                                                                               aGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAaacaac                                                     <  2:1418435/139‑1 (MQ=255)
                                                                                    gtgagtgaTGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCaaaa                                                >  1:322405/1‑139 (MQ=255)
                                                                                     tgagtgaTGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCaaaaa                                               >  1:512591/1‑139 (MQ=255)
                                                                                     tgagtgaTGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCaaaaa                                               >  2:1429650/1‑139 (MQ=255)
                                                                                     tgagtgaTGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCaaaaa                                               >  2:1044451/1‑139 (MQ=255)
                                                                                      gagtgaTGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAAt                                              >  2:1564140/1‑139 (MQ=255)
                                                                                              atCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTg                                      <  2:322405/139‑1 (MQ=255)
                                                                                                 tGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATaaaaaa                                                         >  1:683570/1‑117 (MQ=255)
                                                                                                 tGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATaaaaaa                                                         <  2:683570/117‑1 (MQ=255)
                                                                                                      tGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAg                              >  2:906187/1‑139 (MQ=255)
                                                                                                      tGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAg                              >  1:333207/1‑139 (MQ=255)
                                                                                                        cTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAaacaac                                                     >  2:565960/1‑114 (MQ=255)
                                                                                                        cTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAaacaac                                                     <  1:565960/114‑1 (MQ=255)
                                                                                                        cTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCg                            <  1:906187/139‑1 (MQ=255)
                                                                                                        cTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCg                            <  2:333207/139‑1 (MQ=255)
                                                                                                        cTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCg                            >  1:1133702/1‑139 (MQ=255)
                                                                                                        cTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCg                            <  1:870654/139‑1 (MQ=255)
                                                                                                          ttCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATaga                                           >  1:1183360/1‑122 (MQ=255)
                                                                                                          ttCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATaga                                           <  2:1183360/122‑1 (MQ=255)
                                                                                                           tCTTGCTGTTCGCTACTGCATATGGTGTAAAACCTGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCa                                                   >  2:752687/1‑113 (MQ=255)
                                                                                                           tCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGa                                                                                       >  1:899157/1‑77 (MQ=255)
                                                                                                           tCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGa                                                                                       <  2:899157/77‑1 (MQ=255)
                                                                                                           tCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGa                                                                                       <  1:239923/77‑1 (MQ=255)
                                                                                                           tCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGa                                                                                       >  2:239923/1‑77 (MQ=255)
                                                                                                           tCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCa                                                   <  1:752687/113‑1 (MQ=255)
                                                                                                           tCTTGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATa                         >  1:887604/1‑139 (MQ=255)
                                                                                                             ttGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATaga                                           >  2:858296/1‑119 (MQ=255)
                                                                                                             ttGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATaga                                           <  1:858296/119‑1 (MQ=255)
                                                                                                             ttGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTg                                  >  2:867929/1‑128 (MQ=255)
                                                                                                             ttGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTg                                  <  1:867929/128‑1 (MQ=255)
                                                                                                             ttGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTCAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGc                             >  1:341371/1‑133 (MQ=255)
                                                                                                             ttGCTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTCAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGc                             <  2:341371/133‑1 (MQ=255)
                                                                                                                cTGTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTa                    <  2:35143/139‑1 (MQ=255)
                                                                                                                  gTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTg                                  >  2:661579/1‑123 (MQ=255)
                                                                                                                  gTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTg                                  <  1:661579/123‑1 (MQ=255)
                                                                                                                  gTTCGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAAc                  >  1:760227/1‑139 (MQ=255)
                                                                                                                     cGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGa                                                                                       <  2:492779/67‑1 (MQ=255)
                                                                                                                     cGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGa                                                                                       >  1:492779/1‑67 (MQ=255)
                                                                                                                     cGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTgg               >  2:542192/1‑139 (MQ=255)
                                                                                                                     cGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTgg               >  1:27531/1‑139 (MQ=255)
                                                                                                                     cGCTACTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTgg               >  2:750696/1‑139 (MQ=255)
                                                                                                                          cTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAAc                  >  2:931565/1‑131 (MQ=255)
                                                                                                                          cTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAAc                  <  1:931565/131‑1 (MQ=255)
                                                                                                                          cTGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTGGTAAag          <  1:1044451/139‑1 (MQ=255)
                                                                                                                           tGCATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTGGTAAagt         <  2:512591/139‑1 (MQ=255)
                                                                                                                             cATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGaa                                                                               >  2:1627360/1‑67 (MQ=255)
                                                                                                                             cATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGaa                                                                               <  1:1627360/67‑1 (MQ=255)
                                                                                                                             cATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCg                            >  2:598811/1‑118 (MQ=255)
                                                                                                                             cATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCg                            <  1:598811/118‑1 (MQ=255)
                                                                                                                             cATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGa                           <  2:887173/119‑1 (MQ=255)
                                                                                                                             cATATGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGa                           >  1:887173/1‑119 (MQ=255)
                                                                                                                               tatGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTAtttttt                                                                                         >  2:536471/1‑55 (MQ=255)
                                                                                                                               tatGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTAtttttt                                                                                         <  1:536471/55‑1 (MQ=255)
                                                                                                                               tatGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTGGTAAAgtagta     >  2:1203246/1‑139 (MQ=255)
                                                                                                                                 tGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCg                            >  2:812909/1‑114 (MQ=255)
                                                                                                                                 tGGTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCg                            <  1:812909/114‑1 (MQ=255)
                                                                                                                                  ggTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGc                             <  2:1106872/112‑1 (MQ=255)
                                                                                                                                  ggTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGc                             >  1:1106872/1‑112 (MQ=255)
                                                                                                                                  ggTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTGGTaa            >  1:391534/1‑129 (MQ=255)
                                                                                                                                  ggTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTGGTaa            <  2:391534/129‑1 (MQ=255)
                                                                                                                                  ggTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTGGTAAAGTAGTAttt  >  1:762456/1‑139 (MQ=255)
                                                                                                                                  ggTGTAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTGGTAAAGTAGTAttt  >  1:147403/1‑139 (MQ=255)
                                                                                                                                       |                                                                                                                                      
GCTCTGAAACAACCTCTTTAATATCTACCTGCTCGATCACAACATGTTCAGGTAGAATATTAAATTTTTGGCATATCTCAGCAAGTGAGTGATGATCTGTAATGCTTTCTTGCTGTTCGCTACTGCATATGGTGTAAAAAAATGAACGCATCTGATGCACTCCGGTGTCATAAATTATTTTTTGATACCTGAATAATGTCATTTTGCATAAAAAACAACCAAAAATAGAGAGTGATTGCCAGCGATACTTTAACTGGTAAAGTAGTATTT  >  NC_000913/293639‑293908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: