Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,196 IS5 (+) +4 bp intergenic (‑274/‑328) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1293196 =0 (0.000)95 (1.320) 55/220 0.1 100% intergenic (‑274/‑331) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1300693 NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 12931990 (0.000)71 (0.990) 49/220 0.2 100% intergenic (‑277/‑328) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 1299499 = NA (NA)noncoding (1/1195 nt) IS5 repeat region

Only 100 of 165 total aligned reads displayed.

TAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATTGTGAAT  >  NC_000913/1293064‑1293337
                                                                                                                                       |                                                                                                                                          
tAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGgga                                                                                                                                         <  1:1558405‑M1/139‑4 (MQ=255)
    cAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggt                                                                                                                                     <  2:1540375‑M1/139‑8 (MQ=255)
      aatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccacttattcgcaccttccTTAGTTGTGTTTa                                                                                                                                   >  2:538178‑M1/127‑139 (MQ=255)
         ggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcaggcgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACga                                                                                                                                >  1:953653‑M1/124‑139 (MQ=255)
         ggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACga                                                                                                                                >  1:528099‑M1/124‑139 (MQ=255)
         ggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACga                                                                                                                                >  2:1126733‑M1/124‑139 (MQ=255)
           gACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaaca                                                                                                                              <  2:145185‑M1/139‑15 (MQ=255)
             cgcgGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaag                                                                                                                            <  2:1627985‑M1/139‑17 (MQ=255)
             cgcgGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGgg                                                                                                                                          >  2:108358‑M1/1‑123 (MQ=255)
             cgcgGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGgg                                                                                                                                          <  1:108358‑M1/125‑3 (MQ=255)
               gaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTc                                                                                                                          >  2:1518250‑M1/118‑139 (MQ=255)
                ggCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtcc                                                                                                                         <  2:150764‑M1/139‑20 (MQ=255)
                aaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTcc                                                                                                                         >  2:937420‑M1/117‑139 (MQ=255)
                 gCATATAGCTCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccc                                                                                                                        <  1:475518‑M1/139‑21 (MQ=255)
                     gtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTAtt                                                                                                                    <  1:417224‑M1/28‑1 (MQ=255)
                            taggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGaa                                                                                                             >  2:697267‑M1/105‑139 (MQ=255)
                               gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACga                                                                                                                                >  1:337191‑M1/102‑117 (MQ=255)
                               gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatga                                                                                                          <  1:856602‑M1/38‑1 (MQ=255)
                               gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatga                                                                                                          <  1:840686‑M1/38‑1 (MQ=255)
                               gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatatccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatga                                                                                                          <  1:1011639‑M1/38‑1 (MQ=255)
                                ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatgat                                                                                                         <  2:895649‑M1/39‑1 (MQ=255)
                                ctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatgat                                                                                                         <  2:39852‑M1/39‑1 (MQ=255)
                                 tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatgatg                                                                                                        >  2:1479862‑M1/100‑139 (MQ=255)
                                 tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatgatg                                                                                                        >  1:878505‑M1/100‑139 (MQ=255)
                                 tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatgatg                                                                                                        >  1:719955‑M1/100‑139 (MQ=255)
                                 tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatgatg                                                                                                        >  2:484797‑M1/100‑139 (MQ=255)
                                 tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatgatg                                                                                                        >  1:1221018‑M1/100‑139 (MQ=255)
                                  gattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTAc                                                                                                                                  >  1:1425381‑M1/99‑112 (MQ=255)
                                       atgatTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaa                                                                                                                                <  2:415128‑M1/109‑13 (MQ=255)
                                        tgatTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcat                                                                                                 >  2:17323‑M1/1‑96 (MQ=255)
                                        tgatTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcat                                                                                                 >  2:1609044‑M1/1‑96 (MQ=255)
                                        tgatTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcat                                                                                                 >  2:1573649‑M1/1‑96 (MQ=255)
                                             tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatgatg                                                                                                        >  1:745037‑M1/88‑127 (MQ=255)
                                             tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatgatg                                                                                                        <  2:745037‑M1/40‑1 (MQ=255)
                                               tacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGt                                                                                          >  1:1152885‑M1/86‑139 (MQ=255)
                                                    gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCaa                                                                                     <  1:1622022‑M1/59‑1 (MQ=255)
                                                    gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCaa                                                                                     <  1:967995‑M1/59‑1 (MQ=255)
                                                      gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATa                                                                                   >  1:152638‑M1/79‑139 (MQ=255)
                                                      gaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATa                                                                                   >  1:101286‑M1/79‑139 (MQ=255)
                                                             tAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaag                                                                                                                            <  1:1108632‑M1/91‑17 (MQ=255)
                                                              cggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatgatg                                                                                                        <  2:1585598‑M1/40‑1 (MQ=255)
                                                              cggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatgatg                                                                                                        >  1:1585598‑M1/71‑110 (MQ=255)
                                                                aaCTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatat                                                                                                                  <  2:849803‑M1/98‑27 (MQ=255)
                                                                 ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGtt                                                                                                                                          >  1:166018‑M1/68‑73 (MQ=255)
                                                                 ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCg                                                                                        <  1:209444‑M1/56‑1 (MQ=255)
                                                                 ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCg                                                                                        >  2:209444‑M1/68‑123 (MQ=255)
                                                                     ccTGATTCATGTCACATTTTATGGG‑‑GATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgg                                                                                             <  2:789575‑M1/112‑48 (MQ=255)
                                                                     ccTGATTCATGTCACATTTTATGGG‑‑GATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgg                                                                                             >  1:789575‑M1/1‑65 (MQ=255)
                                                                          ttCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggag                                                                                           >  1:557720‑M1/1‑62 (MQ=255)
                                                                          gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTg                                                               <  1:1148384‑M1/81‑1 (MQ=255)
                                                                             aTGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaa                                                            >  1:1524478‑M1/1‑59 (MQ=255)
                                                                               gTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTCGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccagagaacagggttcatcat                                                                      <  1:945553‑M1/127‑71 (MQ=255)
                                                                               gTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaact                                                          >  2:258969‑M1/1‑57 (MQ=255)
                                                                               gTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatatgagatcat                                                                                                          >  2:1379359‑M1/1‑57 (MQ=255)
                                                                               gTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatatgagatcat                                                                                                          <  1:1379359‑M1/91‑35 (MQ=255)
                                                                                atgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATACGAGcatgggct                                                                       <  2:1084164‑M1/73‑4 (MQ=255)
                                                                                atgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACt                                                                       >  1:1084164‑M1/53‑125 (MQ=255)
                                                                                    aatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTAt                                                         <  2:594760‑M1/87‑1 (MQ=255)
                                                                                     atgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCt                                                    <  1:1364198‑M1/92‑1 (MQ=255)
                                                                                        tATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtc                                                                 >  1:725724‑M1/1‑48 (MQ=255)
                                                                                        tATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtc                                                                 <  2:725724‑M1/123‑76 (MQ=255)
                                                                                            agtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAg                                                                                                <  2:1647800‑M1/48‑1 (MQ=255)
                                                                                             gtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTa                                                                  <  2:298606‑M1/78‑1 (MQ=255)
                                                                                             gtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTa                                                                  >  1:298606‑M1/40‑117 (MQ=255)
                                                                                              gagaTTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtcc                                                                                                                         >  2:951811‑M1/1‑42 (MQ=255)
                                                                                                agccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACa                                         >  2:350121‑M1/37‑139 (MQ=255)
                                                                                                  ccgttaagaagtttcctgcttgggcgcaccttccTGAGGTGGGTTTACGAGAAGTCCCGATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACaga                                       >  1:495103‑M1/35‑139 (MQ=255)
                                                                                                  ccgagaagaatttccccgcttattcgcaccttccTTAGtt                                                                                                                                          >  2:1034852‑M1/35‑40 (MQ=255)
                                                                                                  ccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTcc                                                                                                                         >  2:436769‑M1/35‑57 (MQ=255)
                                                                                                  ccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTcc                                                                                                                         <  1:436769‑M1/23‑1 (MQ=255)
                                                                                                  ccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatgatg                                                                                                        <  1:614119‑M1/40‑1 (MQ=255)
                                                                                                  ccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACaga                                       >  2:1149150‑M1/35‑139 (MQ=255)
                                                                                                  ccgagaagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACaga                                       >  1:602730‑M1/35‑139 (MQ=255)
                                                                                                       aagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatgatg                                                                                                        >  2:387348‑M1/30‑69 (MQ=255)
                                                                                                       aagaatttccccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatgatg                                                                                                        <  1:387348‑M1/40‑1 (MQ=255)
                                                                                                           gCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattca                                   >  2:11725‑M1/1‑29 (MQ=255)
                                                                                                           gCTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccc                                                                                                                        <  2:53017‑M1/49‑21 (MQ=255)
                                                                                                            cTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagta                             >  1:578302‑M1/1‑28 (MQ=255)
                                                                                                            cTGACGACCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca                                                                >  1:1352830‑M1/1‑28 (MQ=255)
                                                                                                               acgacCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc                          >  2:206244‑M1/1‑25 (MQ=255)
                                                                                                               acgacCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt                                          <  2:574978‑M1/123‑99 (MQ=255)
                                                                                                               acgacCTTTCAGTCTTCTGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat                                                                      >  2:1346406‑M1/1‑25 (MQ=255)
                                                                                                                 ccgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACaga                                       <  2:859132‑M1/105‑1 (MQ=255)
                                                                                                                  cgcttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTgcgc                       <  2:131360‑M1/121‑1 (MQ=255)
                                                                                                                    cttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGt                                                                                          >  2:258307‑M1/17‑70 (MQ=255)
                                                                                                                    cttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGt                                                                                          <  1:258307‑M1/54‑1 (MQ=255)
                                                                                                                    cttattcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCaa                     <  2:456840‑M1/123‑1 (MQ=255)
                                                                                                                       tCAGTCTTCTGTATTAGggaaggtgcgaacaagtccc                                                                                                                        <  2:725162‑M1/37‑21 (MQ=255)
                                                                                                                        ttcgcaccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAatgatg                                                                                                        <  1:47423‑M1/40‑1 (MQ=255)
                                                                                                                              tctGTATTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat                                                                      <  1:582966‑M1/80‑71 (MQ=255)
                                                                                                                              ccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAg           >  1:39852‑M1/7‑139 (MQ=255)
                                                                                                                              ccttccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAg           >  1:131360‑M1/7‑139 (MQ=255)
                                                                                                                                 gTATTAGggaaggtgcgaacaagtccctgatatgagat                                                                                                             >  2:236026‑M1/1‑7 (MQ=255)
                                                                                                                                 gTATTAGggaaggtgcgaacaagtccctgatatgagat                                                                                                             <  1:236026‑M1/38‑32 (MQ=255)
                                                                                                                                  ccTTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATtg       <  2:587522‑M1/137‑1 (MQ=255)
                                                                                                                                      aGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATTGTGaa   <  1:587522/139‑1 (MQ=255)
                                                                                                                                      aGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATTGTGaa   <  2:377029/139‑1 (MQ=255)
                                                                                                                                       gggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattt  >  1:872595‑M1/1‑1 (MQ=255)
                                                                                                                                       gggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattt  >  1:1325467‑M1/1‑1 (MQ=255)
                                                                                                                                       gggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcca                                                                                        <  2:1230495‑M1/53‑53 (MQ=255)
                                                                                                                                       |                                                                                                                                          
TAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCAGTCTTCTGTATTAGTTGTGTTTACGAGAATTCCCTATTAAGCGAATGATGAAAAGTAGAACAGTCGCAATAAGAGCATGGACTTAGTATTGCACTATCTCCTGGAGGTCAACAGAGGGCTATTACTTGCGCAACAGGTTAAAGATTGTGAAT  >  NC_000913/1293064‑1293337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.