| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,201,128 | T→C | intergenic (‑96/‑369) | xisE ← / → ymfI | e14 prophage, putative excisionase/e14 prophage, uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,201,128 | 0 | T | C | 91.1% | 392.1 / 18.7 | 123 | intergenic (‑96/‑369) | xisE/ymfI | e14 prophage, putative excisionase/e14 prophage, uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base T (6/5); new base C (58/54); total (64/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.79e-01 | |||||||||||
Only 100 of 123 total aligned reads displayed.
TCAGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTACACACAGCATAAA > NC_000913/1200995‑1201260 | tCAGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCca < 1:827468/139‑1 (MQ=255)tCAGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCca < 1:217512/139‑1 (MQ=255) cATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCa > 2:189543/1‑139 (MQ=255) ttAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGt > 2:813570/1‑134 (MQ=255) ttAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTc > 2:377793/1‑135 (MQ=255) ttAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGt > 1:225519/1‑139 (MQ=255) aaCATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTa > 2:1479776/1‑121 (MQ=255) aaCATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGtta > 1:1353303/1‑139 (MQ=255) ttGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAAc < 2:1248759/139‑1 (MQ=255) tatGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGAGTTATTAACCCGTCATc < 2:1439495/139‑1 (MQ=255) gCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCgg < 2:358014/139‑1 (MQ=255) gCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCgg < 1:626484/139‑1 (MQ=255) aTCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGa < 1:996722/139‑1 (MQ=255) tCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCgg > 2:838507/1‑115 (MQ=255) tCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCgg < 1:838507/115‑1 (MQ=255) cACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCg > 1:1251762/1‑126 (MQ=255) cACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGttatt < 1:585878/120‑1 (MQ=255) cACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGttatt > 2:585878/1‑120 (MQ=255) aCCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATAc > 1:94896/1‑139 (MQ=255) ccTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATAct < 1:189543/139‑1 (MQ=255) ttaCTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTATCCCGTCATCCGGGGATACtcttct < 2:94896/139‑1 (MQ=255) tacACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGt > 2:497751/1‑139 (MQ=255) tacACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGt < 1:920025/139‑1 (MQ=255) cacTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGttt > 2:1180105/1‑139 (MQ=255) cacTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGttt > 2:467726/1‑139 (MQ=255) tAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGc < 1:147796/76‑1 (MQ=255) aaCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGcc < 1:814859/76‑1 (MQ=255) aaCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGcc > 2:814859/1‑76 (MQ=255) aaCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCcac < 1:680380/78‑1 (MQ=255) aaCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTa > 1:331519/1‑139 (MQ=255) aCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCcaca < 2:613923/78‑1 (MQ=255) aCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCca > 2:1096826/1‑76 (MQ=255) aCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCca < 1:1096826/76‑1 (MQ=255) aCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAg < 1:1361260/79‑1 (MQ=255) aCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAg > 2:1361260/1‑79 (MQ=255) aCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGt > 1:1364761/1‑109 (MQ=255) aCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACtcttct > 1:1402458/1‑128 (MQ=255) aCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACtcttct < 2:1402458/128‑1 (MQ=255) aCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTaa > 1:263126/1‑139 (MQ=255) gCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTaaaaa > 2:1564751/1‑139 (MQ=255) gCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTaaaaa > 2:915154/1‑139 (MQ=255) tAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAggg < 2:1353303/139‑1 (MQ=255) aGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGc < 1:1424083/139‑1 (MQ=255) gTCTCAGCATGTCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAggg < 2:1341829/137‑1 (MQ=255) gTCTCAGCATGTCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAggg > 1:1341829/1‑137 (MQ=255) tctcAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCgg < 2:916130/139‑1 (MQ=255) ctcAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCcac > 2:1160291/1‑67 (MQ=255) tcAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTa < 2:225519/139‑1 (MQ=255) tcAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTa < 2:331519/139‑1 (MQ=255) cAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCca < 2:1065367/64‑1 (MQ=255) cAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCca > 1:1065367/1‑64 (MQ=255) cAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTAc < 2:1279411/139‑1 (MQ=255) gCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTAt < 1:639442/69‑1 (MQ=255) gCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTAt > 2:639442/1‑69 (MQ=255) gCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGCTGAGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCa > 2:1010059/1‑139 (MQ=255) gCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGttatt > 2:1531228/1‑88 (MQ=255) gCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGttatt < 1:1531228/88‑1 (MQ=255) atatCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGa < 2:263126/139‑1 (MQ=255) atCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCcac < 2:1460973/59‑1 (MQ=255) atCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCcac > 1:1460973/1‑59 (MQ=255) atCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGaaa > 1:164463/1‑139 (MQ=255) tCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTc < 1:1553438/91‑1 (MQ=255) tCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTc > 2:1553438/1‑91 (MQ=255) tCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATa > 1:1571552/1‑102 (MQ=255) cTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATa < 1:309775/96‑1 (MQ=255) cTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTaa > 1:484539/1‑139 (MQ=255) tcggtTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTGCCAGAAAGGACTAAGGaaaaaa > 2:394718/1‑139 (MQ=255) tcggtTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGaaaaaa > 1:344997/1‑139 (MQ=255) tcagtTAGTTTCTCCACAAGACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGaaaaaa > 2:1096437/4‑139 (MQ=255) gtTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCcac > 1:458556/1‑41 (MQ=255) gtTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCcac < 2:458556/41‑1 (MQ=255) ttAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAggg < 1:1054333/108‑1 (MQ=255) aGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTGCCAGAAAGGACTAAGGAAAAAACTGGTa < 1:394718/139‑1 (MQ=255) tttCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTAcc < 1:497751/139‑1 (MQ=255) tctcCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGt < 1:865205/134‑1 (MQ=255) tctcCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGc < 1:1180105/139‑1 (MQ=255) tcCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCa > 2:1648357/1‑139 (MQ=255) tcCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTaaaa < 1:1169257/96‑1 (MQ=255) tcCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTaaaa > 2:1169257/1‑96 (MQ=255) tcCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCa < 1:1564751/139‑1 (MQ=255) cacaAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTctct < 1:518464/83‑1 (MQ=255) cacaAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTctct > 2:518464/1‑83 (MQ=255) cacaAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTgg < 1:127254/129‑1 (MQ=255) cacaAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTgg > 2:127254/1‑129 (MQ=255) aaaCAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTa > 1:555703/1‑139 (MQ=255) cAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGa < 1:416811/101‑1 (MQ=255) agaagaGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTAcacaca > 1:1440330/1‑139 (MQ=255) agCACCTGCGGCCACAGCTATCAGGATGGGTCGGGttatt > 2:918540/1‑40 (MQ=255) agCACCTGCGGCCACAGCTATCAGGATGGGTCGGGttatt < 1:918540/40‑1 (MQ=255) agCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATc < 2:309452/51‑1 (MQ=255) agCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATc > 1:309452/1‑51 (MQ=255) agCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATa > 2:1409120/1‑59 (MQ=255) agCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTACACACAGCATa > 1:1153686/1‑139 (MQ=255) agCACCTGCGGCCACAGCTATCAGGATGGGTC‑GGTTATTAACCCGTCATCCgg < 1:1055801/53‑1 (MQ=255) agCACCTGCGGCCACAGCTATCAGGATGGGTC‑GGTTATTAACCCGTCATCCgg > 2:1055801/1‑53 (MQ=38) gCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCa > 1:429151/1‑121 (MQ=255) gCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCa < 2:429151/121‑1 (MQ=255) cACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCgggg > 2:729283/1‑54 (MQ=255) cACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCgggg < 1:729283/54‑1 (MQ=255) cACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTACACACAGCATaaa > 2:449682/1‑139 (MQ=255) | TCAGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTACACACAGCATAAA > NC_000913/1200995‑1201260 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |