Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 683,121 C→T A91A (GCG→GCA hscC ← Hsp70 family chaperone Hsc62, RpoD‑binding transcription inhibitor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913683,1210CT100.0% 352.5 / NA 101A91A (GCG→GCAhscCHsp70 family chaperone Hsc62, RpoD‑binding transcription inhibitor
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (56/45);  total (56/45)

Only 100 of 101 total aligned reads displayed.

TTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAATATGATTATTTTCA  >  NC_000913/683010‑683256
                                                                                                               |                                                                                                                                       
ttCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGc                                                                                                              >  2:218696/1‑139 (MQ=255)
  cATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCa                                                                                                            <  2:1099423/139‑1 (MQ=255)
  cATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCa                                                                                                            <  2:1315827/139‑1 (MQ=255)
    tCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTGTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGt                                                                                                          <  1:1122077/139‑1 (MQ=255)
     cGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGtt                                                                                                         >  1:660917/1‑139 (MQ=255)
            aTAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGt                                                                                                          >  2:464411/1‑131 (MQ=255)
            aTAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGt                                                                                                          <  1:464411/131‑1 (MQ=255)
              aaGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACt                                                                                                <  2:660917/139‑1 (MQ=255)
                 ccGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGcc                                                                                             >  2:1633335/1‑139 (MQ=255)
                    gAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGc                                                                                              <  2:548607/135‑1 (MQ=255)
                    gAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGc                                                                                              >  1:548607/1‑135 (MQ=255)
                               accacATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTaa                                                                               >  1:833925/1‑139 (MQ=255)
                                  acaTCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCg                                                                                                               >  1:205340/1‑104 (MQ=255)
                                  acaTCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCg                                                                                                               <  2:205340/104‑1 (MQ=255)
                                    aTCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGc                                                                                                              >  2:1382163/1‑103 (MQ=255)
                                    aTCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGc                                                                                                              <  2:14036/103‑1 (MQ=255)
                                    aTCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGc                                                                                                              >  1:14036/1‑103 (MQ=255)
                                    aTCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGc                                                                                                              <  1:1382163/103‑1 (MQ=255)
                                    aTCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTg                                                                                        >  1:86715/1‑125 (MQ=255)
                                    aTCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTg                                                                                        <  2:86715/125‑1 (MQ=255)
                                       tttAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCt                                                                       <  2:107231/139‑1 (MQ=255)
                                        ttAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGc                                                                                                              >  1:318321/1‑99 (MQ=255)
                                        ttAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGc                                                                                                              <  2:318321/99‑1 (MQ=255)
                                        ttAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTg                                                                      <  2:1031088/139‑1 (MQ=255)
                                         tAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGc                                                                     >  2:332296/1‑139 (MQ=255)
                                          aaTCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTg                                                                                        >  1:543342/1‑119 (MQ=255)
                                          aaTCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTg                                                                                        <  2:543342/119‑1 (MQ=255)
                                              ggACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCGAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGttt                                                                >  1:202646/1‑139 (MQ=255)
                                               gACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACg                                                                         <  2:516400/129‑1 (MQ=255)
                                               gACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACg                                                                         >  1:516400/1‑129 (MQ=255)
                                                aCGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAAt                                                                                                                                >  1:886134/1‑73 (MQ=255)
                                                aCGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAAt                                                                                                                                <  2:886134/73‑1 (MQ=255)
                                                aCGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTa                                                              >  1:1169232/1‑139 (MQ=255)
                                                aCGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTa                                                              >  2:1319550/1‑139 (MQ=255)
                                                 cGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCa                                                                                                            <  1:1009345/92‑1 (MQ=255)
                                                 cGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTg                                                                      <  1:483690/130‑1 (MQ=255)
                                                 cGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTg                                                                      >  2:483690/1‑130 (MQ=255)
                                                 cGTTGCAGAAATTCTTCGGCATCTACTTTTAATGAGCGTAATACCAAAGAGAACAGTTCTGGTGCGTTAAATGTGTAGCTGCCTAACCGCCa                                                                                                            >  2:1009345/1‑92 (MQ=255)
                                                  gTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATc                                                            <  2:53087/139‑1 (MQ=255)
                                                    tGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCg                                                          >  2:1648867/1‑139 (MQ=255)
                                                      cAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTAcg                                                                                                <  1:1205329/99‑2 (MQ=255)
                                                      cAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACt                                                                                                >  2:1205329/1‑99 (MQ=255)
                                                          aaTTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCg                                                    <  2:833925/139‑1 (MQ=255)
                                                            ttcttcGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTg                                                                                        >  2:585585/1‑101 (MQ=255)
                                                            ttcttcGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTg                                                                                        <  1:585585/101‑1 (MQ=255)
                                                              cttcGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCa                                                                                                            >  1:642819/1‑79 (MQ=255)
                                                              cttcGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCa                                                                                                            <  2:642819/79‑1 (MQ=255)
                                                              cttcGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGt                                                >  2:426193/1‑139 (MQ=255)
                                                               ttcGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTa                                               <  1:1633335/139‑1 (MQ=255)
                                                                tcGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTAc                                              >  1:645863/1‑139 (MQ=255)
                                                                tcGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTAc                                              >  1:933058/1‑139 (MQ=255)
                                                                     aTCTTCTTTTAATGAGCGTAATACCAAAGAGGATAGTTCTGGTGCGTTAAATGTGTCGCTTCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTa                                               <  2:1002566/133‑1 (MQ=255)
                                                                     aTCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTa                                               >  1:1002566/1‑133 (MQ=255)
                                                                                aTGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATgtgt                                                                                                                            <  2:1607621/45‑1 (MQ=255)
                                                                                aTGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATgtgt                                                                                                                            >  1:1607621/1‑45 (MQ=255)
                                                                                aTGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGAt                                                       >  1:112418/1‑114 (MQ=255)
                                                                                aTGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGAt                                                       <  2:112418/114‑1 (MQ=255)
                                                                                aTGAGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCgg                              >  2:1382007/1‑139 (MQ=255)
                                                                                   aGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTg                                                                                        >  2:117049/1‑78 (MQ=255)
                                                                                   aGCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTg                                                                                        <  1:117049/78‑1 (MQ=255)
                                                                                    gCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTa                                               <  2:528128/118‑1 (MQ=255)
                                                                                    gCGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTa                                               >  1:528128/1‑118 (MQ=255)
                                                                                     cGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCGGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTc                         >  1:144219/1‑139 (MQ=255)
                                                                                     cGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTg                                                                                        >  2:1260026/1‑76 (MQ=255)
                                                                                     cGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTg                                                                                        <  1:1260026/76‑1 (MQ=255)
                                                                                     cGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTc                         >  1:1402410/1‑139 (MQ=255)
                                                                                     cGTAATACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTc                         >  1:443151/1‑139 (MQ=255)
                                                                                         aTACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGAc                     <  1:270655/139‑1 (MQ=255)
                                                                                         aTACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGAc                     >  1:448629/1‑139 (MQ=255)
                                                                                          tACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGtttt                          >  1:528100/1‑133 (MQ=255)
                                                                                          tACCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGtttt                          <  2:528100/133‑1 (MQ=255)
                                                                                           aCCAAAGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTa                   <  1:1021823/139‑1 (MQ=255)
                                                                                               aaGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCa                                                                                                            <  2:900780/46‑1 (MQ=255)
                                                                                               aaGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCa                                                                                                            >  1:900780/1‑46 (MQ=255)
                                                                                               aaGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAat               >  2:759796/1‑139 (MQ=255)
                                                                                               aaGAGGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAat               >  2:1037242/1‑139 (MQ=255)
                                                                                                  agGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTa                                                                                                  >  2:715160/1‑53 (MQ=255)
                                                                                                  agGACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTa                                                                                                  <  1:715160/53‑1 (MQ=255)
                                                                                                  agGACAGCTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAATATg            >  1:1424434/1‑139 (MQ=255)
                                                                                                   ggACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCTAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAATATGa           <  1:1037242/139‑1 (MQ=255)
                                                                                                   ggACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAATATGa           <  1:426193/139‑1 (MQ=255)
                                                                                                    gACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCa                                                                                                            <  1:100271/41‑1 (MQ=255)
                                                                                                    gACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCa                                                                                                            >  2:100271/1‑41 (MQ=255)
                                                                                                    gACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGt                                                                                                          <  1:304314/43‑1 (MQ=255)
                                                                                                    gACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGt                                                                                                          >  2:304314/1‑43 (MQ=255)
                                                                                                    gACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTa                                               <  1:1091402/102‑1 (MQ=255)
                                                                                                    gACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTa                                               >  2:1091402/1‑102 (MQ=255)
                                                                                                    gACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAATATGat          >  1:1126157/1‑139 (MQ=255)
                                                                                                    gACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAATATGa           >  1:208199/1‑138 (MQ=255)
                                                                                                    gACAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAATATGa           <  2:208199/138‑1 (MQ=255)
                                                                                                    gACAGTTCTGGTGCGATAAATGTGTCGCTGCCTAACCGCCAGt                                                                                                          >  1:1101131/1‑43 (MQ=255)
                                                                                                    gACAGCTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGt                                                                                                          <  2:1101131/43‑1 (MQ=255)
                                                                                                     aCAGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAATATGatt         >  1:737488/1‑139 (MQ=255)
                                                                                                       aGTTCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAATATGattat       >  1:1314172/1‑139 (MQ=255)
                                                                                                         ttCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGAt                                                       <  2:411593/89‑1 (MQ=255)
                                                                                                         ttCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGAt                                                       >  1:411593/1‑89 (MQ=255)
                                                                                                         ttCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAATATGa           <  1:1231079/133‑1 (MQ=255)
                                                                                                         ttCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAATATGa           >  2:1231079/1‑133 (MQ=255)
                                                                                                         ttCTGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAATATGATTAttt     >  2:1195650/1‑139 (MQ=255)
                                                                                                            tGGTGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAATATGATTATTTTCa  >  2:319971/1‑139 (MQ=255)
                                                                                                               |                                                                                                                                       
TTCATCGCTGAAATAAGCCGGAACGGAGATCACCACATCTTTAATCGGACGTTGCAGAAATTCTTCGGCATCTTCTTTTAATGAGCGTAATACCAAAGAGGACAGTTCTGGCGCGTTAAATGTGTCGCTGCCTAACCGCCAGTTGGTATTACTGCCCATTGCACGTTTAAATAACGCTGCCGTTTTATCCGGATGCGAAGTACGCCGTGATACAGCCGGTTTTCCGACTAAAATATGATTATTTTCA  >  NC_000913/683010‑683256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: