| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 575,786 | Δ31,596 bp | IS5‑mediated | [nmpC]–[ybdK] | 34 genes [nmpC], essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, ybcY, tfaX, appY, ompT, pauD, envY, ybcH, nfrA, nfrB, cusS, cusR, cusC, cusF, cusB, cusA, pheP, ybdG, nfsB, ybdF, ybdJ, [ybdK] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 574689–575788 | 607381 | 31594–32693 | 10 [9] | [0] 53 | insH1–[ybdK] | 35 genes insH1, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, ybcY, tfaX, appY, ompT, pauD, envY, ybcH, nfrA, nfrB, cusS, cusR, cusC, cusF, cusB, cusA, pheP, ybdG, nfsB, ybdF, ybdJ, [ybdK] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 575785 | NA (NA) | 53 (1.030) | 37/224 | 0.2 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 607382 = | 0 (0.000) | coding (2/1119 nt) | ybdK | weak gamma‑glutamyl:cysteine ligase | |||||
GATCTTATTTTTAACCGCGTCAATCAGCATTGAAGAGTCCTGGCTTAAGTCATAGCCCGGCGGATTAACCACCTGCATTTCCAGTTCAATACCGAGGGTAAAAGGTTCAGAAACATGAAAATCGGGTAATGGCATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTTGGTGATGGTGAACTGATGGTGCCTGAAGCAATTTGGCTACTTT > NC_000913/607249‑607515 | tcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGt < 1:912014‑M2/6‑1 (MQ=255)tcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGt < 1:826102‑M2/6‑1 (MQ=255) tctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTtctc < 1:188061‑M2/11‑1 (MQ=255) gtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTAt > 1:518320‑M2/125‑139 (MQ=255) gcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGttt > 1:1087500‑M2/115‑139 (MQ=255) cttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGtttt < 2:321011‑M2/26‑1 (MQ=255) actgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTa < 1:703569‑M2/29‑1 (MQ=255) actgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTa < 2:765650‑M2/29‑1 (MQ=255) tgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTAtt < 2:566743‑M2/31‑1 (MQ=255) gcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAg > 2:585625‑M2/92‑139 (MQ=255) gcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAg < 1:585625‑M2/48‑1 (MQ=255) aagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTggg < 2:889653‑M2/56‑1 (MQ=255) gttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCg < 1:184951‑M2/58‑1 (MQ=255) gttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCg < 2:391148‑M2/58‑1 (MQ=255) ctcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCgg < 2:653583‑M2/66‑1 (MQ=255) ctcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCgg < 1:1074543‑M2/66‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTc > 1:143325‑M2/68‑139 (MQ=255) ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGaa > 2:340842‑M2/63‑139 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATa < 2:362567‑M2/3‑1 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATa > 1:362567‑M2/60‑62 (MQ=255) tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGt > 2:499394‑M2/60‑139 (MQ=255) gttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGtt > 2:628927‑M2/59‑139 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGttt > 1:569989‑M2/58‑139 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGc > 2:835283‑M2/53‑73 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGc < 1:835283‑M2/21‑1 (MQ=255) ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCgg > 2:462647‑M2/52‑117 (MQ=255) ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCgg < 1:462647‑M2/66‑1 (MQ=255) ctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCttttttt < 1:628927‑M2/90‑1 (MQ=255) ccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGaa > 2:568839‑M2/48‑115 (MQ=255) ccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGaa < 1:568839‑M2/68‑1 (MQ=255) ccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTtg > 2:663192‑M2/48‑139 (MQ=255) ccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTATTtg > 1:559058‑M2/48‑139 (MQ=255) atgacaaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTtggtga < 2:1087500‑M2/96‑1 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGaa < 2:1018972‑M2/77‑1 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGaa > 1:1018972‑M2/40‑116 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTtggtgatggtg < 1:970608‑M2/101‑1 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTTGGTGATGGTGaa < 2:518320‑M2/103‑1 (MQ=255) tctcatatcagggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTTGGTGATGGTGAACTGATg < 2:940327‑M2/109‑1 (MQ=255) gggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTTGGTGATGGTGAACTGATGGTGCCTGAAg > 2:247472‑M2/21‑139 (MQ=255) gggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAG‑CGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTtgg < 1:646140‑M2/92‑1 (MQ=255) gggacttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAG‑CGGAGCGGCTGGGCGAGATGCGGAAGCTCTGGAATGTTTCTTTTTTTtgg > 2:646140‑M2/21‑112 (MQ=255) cttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTTGGTGATGGTGAACTGAt < 1:855370‑M2/108‑1 (MQ=255) cttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTTGGTGATGGTGAACTGAt > 2:855370‑M2/17‑124 (MQ=255) cttgttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTTGGTGATGGTGAACTGATGGTGCCTGAAGCAAt > 1:1113110‑M2/17‑139 (MQ=255) ttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCgg > 2:1038437‑M2/13‑78 (MQ=255) ttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCgg < 1:1038437‑M2/66‑1 (MQ=255) ttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTtggtga > 2:504791‑M2/13‑108 (MQ=255) ttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTtggtga < 1:504791‑M2/96‑1 (MQ=255) ttcgcaccttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTTGGTGATGGTGAACTGATGGTGCCTGAAGCAATTTgg < 1:940012‑M2/127‑1 (MQ=255) cttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTTGGTGATGGTGAACTGATGGTGCCTGAAGCAATTTGGCTACttt > 2:147613‑M2/6‑139 (MQ=255) cttccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTTGGTGATGGTGAACTGATGGTGCCTGAAGCAATTTGGCTACttt > 1:268995‑M2/6‑139 (MQ=255) ccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTTGGTGATGGTGaa > 2:1105763‑M2/3‑105 (MQ=255) ccATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTTGGTGATGGTGaa < 1:1105763‑M2/103‑1 (MQ=255) | GATCTTATTTTTAACCGCGTCAATCAGCATTGAAGAGTCCTGGCTTAAGTCATAGCCCGGCGGATTAACCACCTGCATTTCCAGTTCAATACCGAGGGTAAAAGGTTCAGAAACATGAAAATCGGGTAATGGCATAGGTTTCTCTTATGTTGGCGTTTTCTATTCAGTATAGAAGTCGGAGCGGCTGGGCGAGATGCGGAAGTTCTGGAATGTTTCTTTTTTTTGGTGATGGTGAACTGATGGTGCCTGAAGCAATTTGGCTACTTT > NC_000913/607249‑607515 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |