Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,087,2801.G51.5% 426.1 / inf 232intergenic (‑166/+49)yoeI/yeeYuncharacterized protein/LysR family putative transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base . (57/55);  new base G (65/54);  total (122/110)
Fisher's exact test for biased strand distribution p-value = 6.00e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 273 total aligned reads displayed.

TCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCATCCCGCCACCAGCCACTGGC  >  NC_000913/2087144‑2087418
                                                                                                                                         |                                                                                                                                                
 cGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑gg‑g                                                                                                                                             >  2:392098/1‑139 (MQ=255)
 cGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑gg‑g                                                                                                                                             <  1:414217/139‑1 (MQ=255)
  gATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑gg‑gg                                                                                                                                            >  2:181194/1‑139 (MQ=255)
   aTTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑gg‑ggg                                                                                                                                           >  1:508447/1‑139 (MQ=255)
    tttttAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑gg‑gggg                                                                                                                                          <  2:1036351/139‑1 (MQ=255)
      tttAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑gg‑gggggg                                                                                                                                        <  1:1020986/139‑2 (MQ=255)
       ttAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑gg‑ggggggg                                                                                                                                       >  2:866653/1‑137 (MQ=255)
        tAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑gg‑ggggggga                                                                                                                                      <  1:446617/139‑4 (MQ=255)
        tAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGa‑‑aa                                                                                                                                    >  2:883328/1‑139 (MQ=255)
          gTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑gg‑gggggga                                                                                                                                       >  2:105226/1‑134 (MQ=255)
            aaaTATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGAc                                                                                                                                <  2:298399/139‑1 (MQ=255)
            aaaTATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGAc                                                                                                                                <  1:395372/139‑1 (MQ=255)
              atatCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑gg‑gggggggaaatgac                                                                                                                                <  2:442665/139‑10 (MQ=255)
                     tcCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATg                                                                                                                     >  2:336367/1‑139 (MQ=255)
                     tcCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATg                                                                                                                     >  2:728556/1‑139 (MQ=255)
                      ccGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATg                                                                                                                     <  1:1112170/139‑1 (MQ=255)
                         gTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑aga                                                                                                                          >  1:863987/1‑131 (MQ=255)
                         gTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGagag                                                                                                                 >  1:298019/1‑139 (MQ=255)
                          tACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGAc                                                                                                                                >  1:282507/1‑126 (MQ=255)
                          tACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑gg‑gggggggaaatgac                                                                                                                                >  1:441592/1‑118 (MQ=255)
                          tACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAgg                                                                                                                >  2:965942/1‑139 (MQ=255)
                               aGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGAc                                                                                                                                >  1:941522/1‑121 (MQ=255)
                               aGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑aga                                                                                                                          <  2:861885/125‑1 (MQ=255)
                               aGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTg                                                                                                            >  2:824166/1‑139 (MQ=255)
                               aGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑gg‑ggggggga                                                                                                                                      >  2:361457/1‑113 (MQ=255)
                               aGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑gg‑gggggg                                                                                                                                        >  1:284301/1‑113 (MQ=255)
                               aGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑gg‑gggggg                                                                                                                                        <  2:284301/114‑2 (MQ=255)
                               aGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGt                                                                                                           >  1:673039/1‑139 (MQ=255)
                                    ggCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGaa                                                                                                      <  2:207835/139‑1 (MQ=255)
                                    ggCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGaa                                                                                                      <  2:1012945/139‑1 (MQ=255)
                                                tgaatgaTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCtt                                                                                           >  2:639671/1‑139 (MQ=255)
                                                tgaatgaTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑gg‑ggggg                                                                                                                                         >  2:939176/1‑96 (MQ=255)
                                                  aatgaTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTa                                                                                         >  2:1064855/1‑139 (MQ=255)
                                                  aatgaTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTGGTCAGAATAATTTTTCTTTa                                                                                         >  1:1083343/1‑139 (MQ=255)
                                                  aatgaTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AAt                                                                                                                                   >  2:59257/1‑98 (MQ=255)
                                                  aatgaTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑aga                                                                                                                          <  2:118038/105‑1 (MQ=255)
                                                  aatgaTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑aga                                                                                                                          >  1:118038/1‑105 (MQ=255)
                                                  aatgaTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTaa                                                                                        <  2:687719/139‑1 (MQ=255)
                                                    tgaTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTaa                                                                                        >  2:762813/1‑139 (MQ=255)
                                                    tgaTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTaaa                                                                                       >  1:156522/1‑139 (MQ=255)
                                                    tgaTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAAt                                                                                      >  1:184841/1‑139 (MQ=255)
                                                    agaTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGACGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTACCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTaaa                                                                                       >  2:689293/2‑139 (MQ=255)
                                                      aTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAAt                                                                                      >  1:837495/1‑139 (MQ=255)
                                                      aTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAgg                                                                                                                >  1:843035/1‑111 (MQ=255)
                                                      aTTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGGGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATgg                                                                                    >  1:1006509/1‑139 (MQ=255)
                                                       ttGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATgg                                                                                    >  1:781647/1‑139 (MQ=255)
                                                       ttGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGa                                                                                                                                        >  1:753534/1‑90 (MQ=255)
                                                        tGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGc                                                                                   >  1:645688/1‑139 (MQ=255)
                                                        tGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGg‑‑aaat                                                                                                                                  >  2:321573/1‑91 (MQ=255)
                                                        tGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGg‑‑aaat                                                                                                                                  <  1:321573/93‑3 (MQ=255)
                                                        tGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGt                                                                                                           <  1:390631/114‑1 (MQ=255)
                                                        tGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCt                                                                                  >  2:1097974/1‑139 (MQ=255)
                                                          gTTTGAAGCAAAAACTAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTCGTCAGAATAATTTTTCTTTAAATGGCTGa                                                                                >  1:123485/1‑139 (MQ=255)
                                                             tGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑gg‑gggggggaaatgac                                                                                                                                >  2:560267/1‑83 (MQ=255)
                                                              gAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGAttt                                                                             >  2:491773/1‑139 (MQ=255)
                                                                cgCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTcc                                                                          >  1:699236/2‑139 (MQ=255)
                                                                     aaaaTAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGtcat                                                                     <  2:943729/139‑1 (MQ=255)
                                                                       aaTAACCGACGCTGATGATACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTATCCGtcatc                                                                    <  2:751587/139‑1 (MQ=255)
                                                                       aaTAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGtcatc                                                                    <  2:156522/139‑1 (MQ=255)
                                                                          aaCCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGAt                                                                <  1:309088/139‑1 (MQ=255)
                                                                           aCCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGAt                                                                <  1:1064855/139‑1 (MQ=255)
                                                                            ccGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACa                                                                                                                               <  2:1051843/76‑1 (MQ=255)
                                                                             cGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGAttt                                                              <  2:452544/139‑1 (MQ=255)
                                                                              gACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑gg‑ggg                                                                                                                                           <  1:969416/64‑1 (MQ=255)
                                                                               aCGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTg                                                            >  1:1025011/1‑139 (MQ=255)
                                                                               aCGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGAc                                                                                                                                <  2:401588/72‑1 (MQ=255)
                                                                               aCGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGAc                                                                                                                                >  1:401588/1‑72 (MQ=255)
                                                                               aCGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTc                                                                           >  1:812208/1‑123 (MQ=255)
                                                                               aCGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTc                                                                           <  2:812208/123‑1 (MQ=255)
                                                                               aCGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGc                                                           <  2:548993/139‑1 (MQ=255)
                                                                                 gCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGAc                                                                                                                                <  1:346760/70‑1 (MQ=255)
                                                                                 gCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCAt                                                         <  2:1006509/139‑1 (MQ=255)
                                                                                        aaaCGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATGGGG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAaca                                                    <  2:314544/139‑1 (MQ=255)
                                                                                        aaaCGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACAcc                                                  <  1:958047/139‑1 (MQ=255)
                                                                                          aCGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCgg                                                >  2:416930/1‑139 (MQ=255)
                                                                                           cGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCgg                                                <  2:893633/139‑1 (MQ=255)
                                                                                            gTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGTATAAACACCGGc                                               <  1:544260/139‑1 (MQ=255)
                                                                                            gTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAAGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCg                                              <  2:699236/139‑1 (MQ=255)
                                                                                               ggTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGa                                                                                                                                 <  1:173642/55‑1 (MQ=255)
                                                                                               ggTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATc                                           >  1:688230/1‑139 (MQ=255)
                                                                                                     tAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑gg‑g                                                                                                                                             >  1:582270/1‑39 (MQ=255)
                                                                                                      aGTCATTTTTTGACAGCGGCGCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑aga                                                                                                                          <  2:192736/54‑1 (MQ=255)
                                                                                                       gTCATTTTTTGACAGCGGCGCATTGTGCCCAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTAtt                                   <  2:276315/139‑1 (MQ=255)
                                                                                                           ttttttGACAGCGGCGCATTGTGCCTAAATGGGG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGt                                                                                                           >  1:912597/1‑65 (MQ=255)
                                                                                                            tttttGACAGCGGCGCATTGTGCCTAAATGGGG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGCCGGAATAATTTTTCTTTAAATGGTTGATTTTCGGTCATCAGTTTTTGCATAAACCCCGCCGATCGCACTATTTGc                                >  1:197349/1‑139 (MQ=255)
                                                                                                                     gcggcgCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTa                                     >  1:614443/1‑124 (MQ=255)
                                                                                                                     gcggcgCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCAt                     <  2:517849/139‑1 (MQ=255)
                                                                                                                      cggcgCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCt                                                                                                              <  2:252489/50‑1 (MQ=255)
                                                                                                                      cggcgCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAAt                                                                                      >  1:558658/1‑74 (MQ=255)
                                                                                                                      cggcgCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCAt                     >  1:937947/1‑139 (MQ=255)
                                                                                                                      cggcgCATTGTGCCTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCAt                     >  1:214454/1‑139 (MQ=255)
                                                                                                                      cggcgCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACAAGAGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGAttt                                                              >  2:978884/1‑99 (MQ=255)
                                                                                                                      cggcgCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCg                                          <  2:925853/117‑1 (MQ=255)
                                                                                                                      cggcgCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCATc                    <  1:468047/139‑1 (MQ=255)
                                                                                                                            tttGTGCCTAAATTGGGAGGGGGA‑‑AATGACA‑‑AGAGAATGAGGGGCTTCTCAGAAGAATTTTACTTACACTGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTGTTTGCTAAAATTTCATCCCg                 <  1:738848/138‑1 (MQ=255)
                                                                                                                                 gCCTAAAT‑‑GG‑GGGGGG‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCATCCCGCCACCAGc         <  2:123485/139‑1 (MQ=255)
                                                                                                                                   cTAAATG‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCa                                        <  2:744449/107‑1 (MQ=255)
                                                                                                                                   cTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCATCCCGCCACCAGCCa       <  2:193629/139‑1 (MQ=255)
                                                                                                                                     aaaT‑‑GG‑GGGGGAGGAATGACA‑‑AGAGGAGGAGAGACTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGACATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCAGCCCGCCACCAGCCa       <  2:845894/139‑1 (MQ=255)
                                                                                                                                     aaaT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCgg                                                <  1:1055411/96‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                                
TCGATTTTTAGTAAATATCTATCCGGTACGAAGCCCGGCCTCTTGGTATGAATGATTGGTTTGAAGCAAAAAATAACCGACGCTGATGAAACGTCGGTTTTTAGTCATTTTTTGACAGCGGCGCATTGTGCCTAAAT‑‑GG‑GGGGGA‑‑AATGACA‑‑AGAGAATGAGAGGCTTGTCAGAATAATTTTTCTTTAAATGGCTGATTTTCCGTCATCAGATTTTGCATAAACACCGGCGATCGCACTATTTGCTAAAATTTCATCCCGCCACCAGCCACTGGC  >  NC_000913/2087144‑2087418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑