| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,201,128 | T→C | intergenic (‑96/‑369) | xisE ← / → ymfI | e14 prophage, putative excisionase/e14 prophage, uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,201,128 | 0 | T | C | 100.0% | 254.3 / NA | 67 | intergenic (‑96/‑369) | xisE/ymfI | e14 prophage, putative excisionase/e14 prophage, uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (33/34); total (33/34) | |||||||||||
AGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTACACACAGCATA > NC_000913/1200997‑1201258 | agcagcCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGCTCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCcaaa < 1:671686/139‑3 (MQ=255)agcagcCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCcaca < 1:318262/139‑1 (MQ=255) cagcCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGc > 2:561156/1‑139 (MQ=255) cagcCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGc > 1:1088953/1‑139 (MQ=255) cccATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTAt > 2:928867/1‑139 (MQ=255) ttAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGt > 2:692172/1‑139 (MQ=255) aaGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCg < 2:916736/139‑1 (MQ=255) tatGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATc < 2:129929/139‑1 (MQ=255) tatGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATc < 1:928867/139‑1 (MQ=255) aTCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGa < 2:103415/139‑1 (MQ=255) tCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGAt < 2:576382/139‑1 (MQ=255) cACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATa < 1:630784/139‑1 (MQ=255) ccTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATAct > 1:771959/1‑139 (MQ=255) attaCTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACtcttc > 1:378631/1‑139 (MQ=255) cacTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAgg > 2:1094972/1‑92 (MQ=255) cacTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAgg < 1:1094972/92‑1 (MQ=255) cacTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGAt < 1:69651/94‑1 (MQ=255) cacTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGAt > 2:69651/1‑94 (MQ=255) cacTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACtcttct > 2:940253/1‑133 (MQ=255) cacTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACtcttct < 1:940253/133‑1 (MQ=255) cacTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGttt > 2:795085/1‑139 (MQ=255) cacTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGttt > 2:466947/1‑139 (MQ=255) cacTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGttt > 1:35080/1‑139 (MQ=255) cacTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGttt > 1:374630/1‑139 (MQ=255) tAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGa > 2:355657/1‑121 (MQ=255) tAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGa < 1:355657/121‑1 (MQ=255) aCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCca > 1:857289/1‑76 (MQ=255) aCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCca > 1:405772/1‑76 (MQ=255) aCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCca < 2:405772/76‑1 (MQ=255) aCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCca < 2:857289/76‑1 (MQ=255) aCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTAt < 1:926857/83‑1 (MQ=255) aCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTAt > 2:926857/1‑83 (MQ=255) aCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTaa > 1:134082/1‑139 (MQ=255) aCTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTaa > 1:1113770/1‑139 (MQ=255) cTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTaaa < 2:374630/139‑1 (MQ=255) ttAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAgg > 1:989396/1‑139 (MQ=255) ttAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAgg > 1:225487/1‑139 (MQ=255) tAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAggg < 2:641730/139‑1 (MQ=255) tAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAggg < 2:1088953/139‑1 (MQ=255) tAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAggg < 2:348396/139‑1 (MQ=255) aGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGc > 1:73503/1‑139 (MQ=255) tcAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTa < 2:35080/139‑1 (MQ=255) cAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGc > 1:1107334/1‑62 (MQ=255) cAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGc < 2:1107334/62‑1 (MQ=255) gCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCa > 2:710062/1‑139 (MQ=255) atatCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGa < 1:692172/139‑1 (MQ=255) cccTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACt < 1:561156/139‑1 (MQ=255) cccTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACt > 2:718404/1‑139 (MQ=255) tcggtTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATAct < 2:72423/90‑1 (MQ=255) tcggtTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATAct > 1:72423/1‑90 (MQ=255) tcggtTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGaaaaaa > 2:774219/1‑139 (MQ=255) gtTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCgg > 2:290939/1‑80 (MQ=255) gtTAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCgg < 1:290939/80‑1 (MQ=255) tAGTTTCTCCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGt > 2:710865/1‑139 (MQ=255) tctcCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGc < 2:55151/139‑1 (MQ=255) tcCACAAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCa < 2:225487/139‑1 (MQ=255) acaAAACAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGa < 2:74802/139‑1 (MQ=255) aaaaCAGAGAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACt < 2:989396/139‑1 (MQ=255) agagAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTacaca < 1:718404/139‑1 (MQ=255) agagAAGAGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTacaca < 1:466947/139‑1 (MQ=255) agaagaGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATc > 1:8988/1‑56 (MQ=255) agaagaGCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATc < 2:8988/56‑1 (MQ=255) agCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTaaa < 1:768508/78‑1 (MQ=255) agCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTaaa > 2:768508/1‑78 (MQ=255) agCACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTACACACAGCATa > 1:999502/1‑139 (MQ=255) cACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGc < 2:565514/118‑1 (MQ=255) cACCTGCGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGc > 1:565514/1‑118 (MQ=255) | AGCAGCCCATTCTTCAAGAGTTAACATTTGAAGCATATGCGATCACCTTATTACTACACTAACTGCTTAGTCTCAGCATATCGACCCTGCACGGTCGGTTAGTTTCTCCACAAAACAGAGAAGAGCACCTGTGGCCACAGCTATCAGGATGGGTCGGGTTATTAACCCGTCATCCGGGGATACTCTTCTCTGTTTTGTAAAAAGGGCGGTACCAGAAAGGACTAAGGAAAAAACTGGTACCGCCAAGACTACACACAGCATA > NC_000913/1200997‑1201258 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |