Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,798,803	T→C	T170T (ACA→ACG)	waaU ←	lipopolysaccharide core biosynthesis

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,798,803	0	T	C	100.0%	268.3 / NA	72	T170T (ACA→ACG)	waaU	lipopolysaccharide core biosynthesis
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (38/34);  total (38/34)

AATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGCTTAAATGAGGGCAT  >  NC_000913/3798674‑3798937                                                                                                                                  |                                                                                                                                       aataatGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCata                                                                                                                               >  2:544557/1‑139 (MQ=255)   taatGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATg                                                                                                                             <  1:75093/139‑1 (MQ=255)     atGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGtt                                                                                                                           <  1:719045/139‑1 (MQ=255)           aTTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCAGAAATATGCTTCAGTATTTCTATTGCTCGCTTACTCATATGTTCTTTTa                                                                                                                     <  2:641084/139‑1 (MQ=255)            ttCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTaa                                                                                                                    >  2:311160/1‑139 (MQ=255)            ttCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTaa                                                                                                                    >  2:95720/1‑139 (MQ=255)                    tctcCAATAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCAt                                                                                                            >  2:861775/1‑139 (MQ=255)                      tcCAATAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCg                                                                                                          >  1:189627/1‑139 (MQ=255)                      tcCAATAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCg                                                                                                          >  2:543212/1‑139 (MQ=255)                      tcCAATAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCg                                                                                                          >  2:1005005/1‑139 (MQ=255)                       ccAATAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGt                                                                                                         >  1:296701/1‑139 (MQ=255)                         aaTAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAAGATTCATCCTgg                                                                                                       >  2:725875/1‑139 (MQ=255)                          aTAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTggg                                                                                                      <  2:1031167/139‑1 (MQ=255)                           tAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTgggg                                                                                                     <  2:1057742/139‑1 (MQ=255)                               ttCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGt                                                                                                         >  2:44172/1‑131 (MQ=255)                               ttCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGt                                                                                                         <  1:44172/131‑1 (MQ=255)                                 cTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTa                                                                                               <  1:668306/139‑1 (MQ=255)                                  ttttattttaTCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACAt                                                                                                                <  2:7170/121‑1 (MQ=255)                                  ttttattttaTCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACAt                                                                                                                >  1:7170/1‑121 (MQ=255)                                            tCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGt                                                                                    <  1:1005005/139‑1 (MQ=255)                                            tCTTCAAAATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGt                                                                                    <  1:854535/139‑1 (MQ=255)                                             cTTCAACATCTACTGGTAATTGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTa                                                                                   <  1:725875/139‑1 (MQ=255)                                             cTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTa                                                                                   <  1:311160/139‑1 (MQ=255)                                                 aaCATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGc                                                                               >  2:195720/1‑139 (MQ=255)                                                 aaCATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGc                                                                               >  1:1105208/1‑139 (MQ=255)                                                 aaCATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGc                                                                               >  1:1081367/1‑139 (MQ=255)                                                  aCATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCt                                                                              <  1:1039826/139‑1 (MQ=255)                                                      cTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTtata                                                                          >  1:397129/1‑139 (MQ=255)                                                        aCTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATAcc                                                                        >  1:465100/1‑139 (MQ=255)                                                         cTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCa                                                                       >  2:516292/1‑139 (MQ=255)                                                           ggTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAAt                                                                     >  2:572352/1‑139 (MQ=255)                                                             tAAATGCAAGTCGTAGTTGGTGGAAACTTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTa                                                                                                                     <  2:666209/89‑1 (MQ=255)                                                             tAAATGCAAGTCGTAGTTGGTGGAAAACTTACTCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTa                                                                                                                     >  1:666209/1‑89 (MQ=255)                                                               aaTGCAAGTCGTAGTTGGTGTAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTgggg                                                                                                     <  2:265333/103‑1 (MQ=255)                                                               aaTGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTgggg                                                                                                     >  1:265333/1‑103 (MQ=255)                                                               aaTGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATc                                                                 >  2:657353/1‑139 (MQ=255)                                                                aTGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCa                                                                >  1:502023/1‑139 (MQ=255)                                                                      gTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTAc                                                                                                                                    <  1:284367/65‑1 (MQ=255)                                                                      gTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTAc                                                                                                                                    >  2:284367/1‑65 (MQ=255)                                                                      gTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCa                                                                       <  1:290503/126‑1 (MQ=255)                                                                      gTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCa                                                                       >  2:290503/1‑126 (MQ=255)                                                                      gTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAAccc                                                          >  2:336046/1‑139 (MQ=255)                                                                       tggTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCa                                                         <  1:657353/137‑1 (MQ=255)                                                                       tCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCa                                                         <  2:189627/139‑1 (MQ=255)                                                                       tCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCa                                                         <  1:171442/139‑1 (MQ=255)                                                                       tCGTAGTTAGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCa                                                         <  1:572352/139‑1 (MQ=255)                                                                         gTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGa                                                       <  2:465100/139‑1 (MQ=255)                                                                                 tggAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGa                                               >  1:267323/1‑139 (MQ=255)                                                                                           aCCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTaaa                                     >  1:810828/1‑139 (MQ=255)                                                                                           aCCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTaaa                                     >  2:642048/1‑139 (MQ=255)                                                                                                cACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGa                                <  2:576839/139‑1 (MQ=255)                                                                                                cACCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGa                                <  2:397129/139‑1 (MQ=255)                                                                                                 aCCATAAATATGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGat                               >  2:914500/1‑139 (MQ=255)                                                                                                          atGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAg                      <  1:516292/139‑1 (MQ=255)                                                                                                           tGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGt                                                                                    <  2:375587/76‑1 (MQ=255)                                                                                                           tGCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGt                                                                                    >  1:375587/1‑76 (MQ=255)                                                                                                            gCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCt                    <  1:543212/139‑1 (MQ=255)                                                                                                            gCTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCt                    <  1:544557/139‑1 (MQ=255)                                                                                                             cTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTaaa                                                                                             <  2:959067/65‑1 (MQ=255)                                                                                                             cTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTaaa                                                                                             >  1:959067/1‑65 (MQ=255)                                                                                                             cTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGaa                                                      >  1:91707/1‑104 (MQ=255)                                                                                                             cTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGaa                                                      <  2:91707/104‑1 (MQ=255)                                                                                                             cTTCAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTa                   >  1:159672/1‑139 (MQ=255)                                                                                                                cAGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGc                >  1:980227/1‑139 (MQ=255)                                                                                                                 aGTATTTCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGCt               >  1:298026/1‑139 (MQ=255)                                                                                                                      ttCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGCTTAAAt          <  1:95720/139‑1 (MQ=255)                                                                                                                      ttCTATTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGCTTAAAt          <  1:884552/139‑1 (MQ=255)                                                                                                                          aTTGCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGCTTAAATGAgg      >  1:343990/1‑139 (MQ=255)                                                                                                                             gCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCa                                                                       <  2:374590/71‑1 (MQ=255)                                                                                                                             gCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCa                                                                       >  1:374590/1‑71 (MQ=255)                                                                                                                             gCTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGCTTAAATGAGGGCa   >  2:7336/1‑139 (MQ=255)                                                                                                                              cTCGCGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGCTTAAATGAGGGCAt  <  2:296701/139‑1 (MQ=255)                                                                                                                                  |                                                                                                                                       AATAATGACTATTCTTGTATCTCCAATAAATTCTTTTATTTTATCTTCAACATCTACTGGTAAATGCAAGTCGTAGTTGGTGGAAAATTTACCCTCACCATAAATATGCTTCAGTATTTCTATTGCTCGTGTACTCATATGTTCTTTTAAACATTCATCGTGGGGATGGTAAAATGAATAGTAACGCTTATACCAATGATCAAAACCCAGAATGTAAGAATCTTTTAAACTTGATAATATTAAGCTATGCTTAAATGAGGGCAT  >  NC_000913/3798674‑3798937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑