New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4586100	40 (0.720)	12 (0.300)	12/194	2.6	29.8%	intergenic (+139/+78)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586128	28 (0.710)					intergenic (+167/+50)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase

GGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGG‑TGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTC  >  NC_002947/4585979‑4586267                                                                                                                                                        |                                                                                                                                            ggCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGG‑TGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGc                                                                                                                                             <  2:778131/150‑1 (MQ=255) ggCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGG‑TGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGc                                                                                                                                             <  1:60061/150‑1 (MQ=255)    gTGAACAGCTGATCTGCGCTGCTCGATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGG‑TGAAGATCTTGTATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCACTGCccc                                                                                                                                          >  2:651946‑M2/1‑147 (MQ=255)              gATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGG‑TGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCAGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagc                                                                                                                                <  2:336503‑M2/150‑14 (MQ=255)                tCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGG‑TGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgg                                                                                                                              >  2:1164668‑M2/1‑135 (MQ=255)                             atggAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGCTCAAG‑TCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGaa                                                                                                                 <  1:408234/147‑1 (MQ=38)                             aTTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGG‑TGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttacccgcgaa                                                                                                                 >  1:79552‑M2/1‑122 (MQ=255)                               tGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGG‑TGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCAGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttacccgcgaaga                                                                                                               >  1:336503‑M2/1‑120 (MQ=255)                                  aaGGTTGAGGATGACCGGGTGCTTGGCAAGG‑TGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttacccgcgaagaggc                                                                                                            >  2:467122‑M2/1‑117 (MQ=255)                                                           gCAAGG‑TGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgg                                                                                                                              <  2:833287‑M2/107‑16 (MQ=255)                                                           gCAAGG‑TGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgg                                                                                                                              >  1:833287‑M2/1‑92 (MQ=255)                                                                g‑TGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggta                                                                                                                                     <  1:9147‑M2/95‑9 (MQ=255)                                                                g‑TGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggta                                                                                                                                     >  2:9147‑M2/1‑87 (MQ=255)                                                                g‑TGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATg                                                                              >  2:536246/1‑150 (MQ=255)                                                                             cATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGCCCGTGCCGTCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAAtct                                                                  <  2:705271/150‑1 (MQ=255)                                                                              aTTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAAtct                                                                  <  2:705318/149‑1 (MQ=255)                                                                              aTTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAAtct                                                                  >  1:705318/1‑149 (MQ=255)                                                                              aTTGATCGGGCCGGCCTCTTCGCGGGCATCGCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAAtctc                                                                 >  1:705271/1‑150 (MQ=255)                                                                               ttGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttac                                                                                                                        >  1:588164‑M2/1‑73 (MQ=255)                                                                               ttGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttac                                                                                                                        <  2:588164‑M2/94‑22 (MQ=255)                                                                                         cggccTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttacccgcgaa                                                                                                                 >  2:176826‑M2/1‑63 (MQ=255)                                                                                         cggccTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttacccgcgaa                                                                                                                 <  1:176826‑M2/91‑29 (MQ=255)                                                                                              tctTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTcc                                                                <  2:1238943/135‑1 (MQ=255)                                                                                              tctTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTcc                                                                >  1:1238943/1‑135 (MQ=255)                                                                                              tctTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCa                                                 >  1:397749/1‑150 (MQ=255)                                                                                               ctTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCAc                                                <  1:536246/150‑1 (MQ=255)                                                                                                ttCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaat                                               <  2:771727‑M2/150‑95 (MQ=255)                                                                                                   gcgGGTAAACCCGCTCCTACCAGGGGCAGCGCC‑GCATTCAAGGCCGGCACGGTCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGAGCTCACGCAt                                            >  2:769468/1‑150 (MQ=11)                                                                                                        tAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATT‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGa                                       >  1:990891/1‑150 (MQ=255)                                                                                                            cccGCTCCTACCAGGTGCCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACtt                                   >  2:720223/1‑150 (MQ=255)                                                                                                            cccGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACtt                                   >  2:873586/1‑150 (MQ=255)                                                                                                             ccGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTc                                  >  2:1203895/1‑150 (MQ=255)                                                                                                               gCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTg                                >  2:262207/1‑150 (MQ=255)                                                                                                               gCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTg                                >  2:581492/1‑150 (MQ=255)                                                                                                                   cTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCAcc                            >  1:489997/1‑150 (MQ=255)                                                                                                                    tACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatc                                                             <  2:286416‑M2/116‑81 (MQ=255)                                                                                                                    tACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatc                                                             >  1:286416‑M2/1‑36 (MQ=255)                                                                                                                    tACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCt                           >  1:1026477/1‑150 (MQ=255)                                                                                                                    tACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCCCCCGTTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCt                           >  1:1317290/1‑150 (MQ=255)                                                                                                                     aCCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgt                          <  2:1189154‑M2/150‑116 (MQ=255)                                                                                                                      ccAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgtt                         <  1:1078861‑M2/150‑117 (MQ=255)                                                                                                                       cAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttacccgcgaa                                                                                                                 >  2:1244996‑M2/1‑33 (MQ=255)                                                                                                                       cAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttacccgcgaa                                                                                                                 <  1:1244996‑M2/61‑29 (MQ=255)                                                                                                                       cAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGc                        <  1:581492/150‑1 (MQ=255)                                                                                                                       cAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGc                        >  1:1210971/1‑150 (MQ=255)                                                                                                                        aGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttca                       <  2:442606‑M2/150‑119 (MQ=255)                                                                                                                         gggACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCcg                      >  1:508666/1‑150 (MQ=255)                                                                                                                         gggACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCcg                      <  1:1203895/150‑1 (MQ=255)                                                                                                                          ggACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggag                                           <  1:577778‑M2/128‑99 (MQ=255)                                                                                                                          ggACCGTGCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggag                                           >  2:577778‑M2/1‑30 (MQ=255)                                                                                                                          ggACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCcaca                                                          <  2:886444/113‑1 (MQ=255)                                                                                                                          ggACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCcaca                                                          >  1:886444/1‑113 (MQ=255)                                                                                                                          ggACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCcgg                     >  2:69149/1‑150 (MQ=255)                                                                                                                            aCCGTGCCGGCCTTGAATG‑CGGCACGGTccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgcc                   <  1:548103‑M2/150‑123 (MQ=255)                                                                                                                                 gCCGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgccggtgc              >  1:1189154‑M2/1‑23 (MQ=255)                                                                                                                                  ccGGCCTTGAATG‑CGGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgccggtgcc             >  1:771727‑M2/1‑22 (MQ=255)                                                                                                                                   cGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATATCTCTCATGCGGAACTTCTGCACCTTGCcggtcacggtca            >  1:1073414/1‑150 (MQ=255)                                                                                                                                     gCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATc          <  2:489997/150‑1 (MQ=255)                                                                                                                                             tG‑CGGCGCTGCccctggtaggagcgggtttacccgcgaagaggccggcccgatcaatgcaagatcttcaccttgccaagcacccggtcatcctcaacctttcaatggagcagcgcagatcagctgttcacgccggtgccgtggtctaccc  >  1:442606‑M2/1‑11 (MQ=255)                                                                                                                                                        |                                                                                                                                            GGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGG‑TGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGTGCCGGCCTTGAATG‑CGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTC  >  NC_002947/4585979‑4586267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.