| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5477138 = | 51 (0.920) | 12 (0.310) | 11/188 | 2.7 | 34.1% | intergenic (+3/+109) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein |
| ? | NC_002947 | 5477237 = | 11 (0.290) | intergenic (+102/+10) | PP_4813/PP_4814 | PAP2 family protein/DedA family protein/ATP‑dependent protease La domain‑containing protein | |||||
ATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGCCAG > NC_002947/5477094‑5477384 | atgcatgcGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTCAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGaa > 1:1100190/1‑150 (MQ=255) tatTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCcag < 2:1100190/150‑1 (MQ=255) ctgtgccggcctattcgcgggtaaacccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggcccgcacaggcaaTACAGAACCATCAGGCCAACAACCCCCCCTGCATCCGCTCCAGCAGCTTCTGGAt > 2:538175‑M2/96‑150 (MQ=255) gCCTCTTCGCGGGTACACCCGCTCCTCGGCACGGGATCGGGCTTATCGTAGGAGCGGCTTTACCCGCGAATAGCCCGCCGCAGGCAATACAGAACCATCAGGCCAACAACTCCCCCTGACTCCGCTCCCGCAGCTTCTGGATCTCCCCCa > 2:222433/1‑150 (MQ=255) GCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTccccc > 2:769042‑M1/1‑116 (MQ=255) GCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTccccc < 1:769042‑M1/116‑1 (MQ=255) gcgGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACAATAAAAACATCGGCTCTTTGTTAATCCTCTCCAGCAGCTTCTGGATCTCGCCCAGCCg‑ctgc > 1:1300276/1‑150 (MQ=25) GGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATc > 1:929433‑M1/1‑88 (MQ=255) GGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATc < 2:929433‑M1/88‑1 (MQ=255) TAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACATGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTgg > 1:776726‑M1/1‑127 (MQ=255) TAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACATGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTgg < 2:776726‑M1/127‑1 (MQ=255) acccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGc > 1:572967‑M2/72‑87 (MQ=255) acccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGc < 2:572967‑M2/16‑1 (MQ=255) acccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTc < 1:919113‑M2/50‑1 (MQ=255) acccgctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTc > 2:919113‑M2/72‑121 (MQ=255) ccgctcctacgataagtgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAAt > 2:93827‑M2/70‑150 (MQ=255) CCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATATCGCCCAGCCG‑CTGCTGTGGCGAAt < 2:1310841‑M1/150‑1 (MQ=255) tacgataagcgcgatcccgtgcgtatcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCg > 1:857751‑M2/68‑150 (MQ=255) gctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGc > 1:132745‑M2/68‑144 (MQ=255) gctcctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGc < 2:132745‑M2/77‑1 (MQ=255) CTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGTAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGa > 2:722828‑M1/1‑150 (MQ=255) ctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGaacaa < 2:758065‑M2/22‑1 (MQ=255) ctacgataagcgcgatcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGaacaa > 1:758065‑M2/64‑85 (MQ=255) gggATCGCGCTTATGGTAGGATCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGATCCATGAGGCGAAAAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTCAGCAgg > 2:133323/1‑150 (MQ=39) gggATCGCGCTTATCGTAGGAGCGGGTTTACCCGAGAATCGGCAGGCACAGGCAATGCATAACCATCAGGTGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGGTGTGGCGAATCGAGGGTCAGCAgg > 1:900924/1‑150 (MQ=255) cgcgCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGCTCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAg < 1:1310841/150‑1 (MQ=255) gcgcTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTc > 1:574467/1‑138 (MQ=255) gcgcTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTc < 2:574467/138‑1 (MQ=255) atcccgtgcgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGc < 1:538175‑M2/101‑1 (MQ=255) aTCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTcc > 2:366117/1‑150 (MQ=255) tCGTAGGAGCGGGTTTGCCCGCCAATAGGCCGGCACAGGCAATACAGAACCGTCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCct < 2:900924/150‑1 (MQ=255) cgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATc > 2:1183580‑M2/42‑76 (MQ=255) cgtaggagcgggtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATc < 1:1183580‑M2/35‑1 (MQ=255) gcgggtttactcgcgcgtaggccggcacaggcaaTACAGAACCATCAGGCCAACAACTCCCCCTGAATGCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATg > 2:332518‑M2/35‑150 (MQ=255) gtttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACg > 2:746297‑M2/31‑150 (MQ=255) tttacccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACgg > 2:613232‑M2/30‑150 (MQ=255) cccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCCCTTCCATGAACGGCAAc < 1:222433‑M2/125‑1 (MQ=255) ccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACa > 1:949908‑M2/25‑150 (MQ=255) ccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACa > 1:180141‑M2/25‑150 (MQ=255) ccgcgaataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCGTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACa > 1:93678‑M2/25‑150 (MQ=255) aataggccggcacaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTAc < 2:949908‑M2/131‑1 (MQ=255) acaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTcc < 2:1256490‑M2/113‑1 (MQ=255) acaggcaaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTcc > 1:1256490‑M2/9‑121 (MQ=255) aaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTCAGCAGCTCCAGCTTGTCCTCTTCCATGACCGGCAACAGGTACGCCAGCTGATTGCCCAg > 1:76853‑M2/3‑150 (MQ=255) aaTACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCACCAGCTTCTAGAATCAGCCCAGCCGACGGCAGCAG‑GAATTTGGTGGCAGCAGTTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGCCAg > 1:1166791/1‑150 (MQ=255) | ATGCATGCGTTGCCGCAGGCGTTGGTCAGGTATCAATATTGATGTTGCCTGTGCCGGCCTATTCGCGGGTAAACCCGCTCCTACGCACGGGATCGCGCTTATCGTAGGAGCGGGTTTACCCGCGAATAGGCCGGCACAGGCAATACAGAACCATCAGGCGAACAACTCCCCCTGAATCCGCTCCAGCAGCTTCTGGATCTCGCCCAGCCG‑CTGCTGTGGCGAATCGAGGGTCAGCAGGTCCAGCTTGTCCTCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGCCAG > NC_002947/5477094‑5477384 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |