mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.2 revision caddc01d3be9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 51 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,741,273 | 1 | . | C | 61.5% | 78.5 / 50.9 | 39 | intergenic (+464/+288) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,275 | 0 | A | G | 61.5% | 30.9 / 31.5 | 39 | intergenic (+466/+286) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 195,634 | 0 | C | T | 53.6% | 3.6 / 121.5 | 97 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 699,725 | 0 | A | G | 53.5% | 1.9 / 50.6 | 44 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | NC_002947 | 4,348,749 | 0 | A | G | 53.2% | 4.3 / 92.3 | 77 | intergenic (‑70/+404) | PP_3820/galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | NC_002947 | 1,327,127 | 0 | C | T | 52.4% | 27.5 / 138.5 | 103 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | NC_002947 | 4,741,302 | 0 | A | G | 52.4% | 6.1 / 47.6 | 44 | intergenic (+493/+259) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,298 | 1 | . | T | 52.3% | 79.6 / 78.0 | 44 | intergenic (+489/+263) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,305 | 0 | A | . | 52.3% | ‑6.2 / 96.1 | 44 | intergenic (+496/+256) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,299 | 0 | C | T | 47.7% | 8.8 / 49.9 | 44 | intergenic (+490/+262) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,301 | 0 | A | C | 47.7% | 3.6 / 53.0 | 44 | intergenic (+492/+260) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 4,741,304 | 0 | C | G | 47.7% | 12.5 / 61.7 | 44 | intergenic (+495/+257) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 195,559 | 0 | C | A | 39.7% | 76.8 / 63.5 | 69 | T355T (ACC→ACA) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 4,741,274 | 0 | A | C | 38.5% | 30.2 / 31.6 | 39 | intergenic (+465/+287) | gltA/yeiW | citrate synthase/putative oxidoreductase |
| * | NC_002947 | 5,079,174 | 0 | T | A | 38.2% | 33.1 / 39.8 | 34 | intergenic (‑371/+26) | mgtE/PP_t56 | magnesium transporter/tRNA‑Arg |
| * | NC_002947 | 2,951,377 | 0 | G | C | 37.1% | 23.2 / 38.2 | 35 | intergenic (‑113/+48) | oguA/PP_2585 | 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase |
| * | NC_002947 | 197,590 | 0 | T | C | 36.0% | 91.4 / 84.4 | 89 | D1032D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 5,079,177 | 0 | T | A | 35.3% | 41.7 / 35.0 | 34 | intergenic (‑374/+23) | mgtE/PP_t56 | magnesium transporter/tRNA‑Arg |
| * | NC_002947 | 196,390 | 0 | T | C | 34.3% | 98.5 / 59.8 | 70 | D632D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| * | NC_002947 | 2,951,385 | 0 | G | T | 33.3% | 39.7 / 25.9 | 37 | intergenic (‑121/+40) | oguA/PP_2585 | 8‑oxoguanine deaminase/alpha‑ketoglutaric semialdehyde dehydrogenase |
| Marginal new junction evidence (lowest skew 10 of 273 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5914240 | 53 (0.960) | 13 (0.300) | 11/214 | 3.2 | 30.3% | intergenic (+76/+77) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase |
| ? | NC_002947 | = 5914280 | 18 (0.410) | intergenic (+116/+37) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase | |||||
| * | ? | NC_002947 | 5914213 = | 49 (0.890) | 14 (0.320) | 11/214 | 3.2 | 33.4% | intergenic (+49/+104) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase |
| ? | NC_002947 | 5914309 = | 17 (0.390) | intergenic (+145/+8) | spuI/argA | glutamylpolyamine synthetase/amino acid N‑acetyltransferase | |||||
| * | ? | NC_002947 | 4896423 = | 62 (1.120) | 13 (0.280) | 12/228 | 3.2 | 19.8% | intergenic (+11/‑197) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein |
| ? | NC_002947 | 4896512 = | 53 (1.140) | intergenic (+100/‑108) | PP_4304/sbp‑I | VIC family cation transporter/sulfate ABC transporter substrate‑binding protein | |||||
| * | ? | NC_002947 | 1296580 = | NA (NA) | 16 (0.310) | 14/252 | 3.2 | NA | intergenic (‑327/‑239) | nhaA‑I/PP_1133 | Na(+)/H(+) antiporter NhaA/transposase |
| ? | NC_002947 | 1296616 = | NA (NA) | intergenic (‑363/‑203) | nhaA‑I/PP_1133 | Na(+)/H(+) antiporter NhaA/transposase | |||||
| * | ? | NC_002947 | 1967188 = | 45 (0.810) | 11 (0.260) | 10/204 | 3.3 | 30.2% | intergenic (+15/+104) | PP_1762/yciK | hypothetical protein/putative oxidoreductase |
| ? | NC_002947 | 1967284 = | 17 (0.410) | intergenic (+111/+8) | PP_1762/yciK | hypothetical protein/putative oxidoreductase | |||||
| * | ? | NC_002947 | 5594143 = | 69 (1.250) | 14 (0.320) | 9/214 | 3.8 | 21.4% | intergenic (‑39/+106) | PP_4921/thiC | NCS1 family transporter/phosphomethylpyrimidine synthase |
| ? | NC_002947 | 5594236 = | 48 (1.100) | intergenic (‑132/+13) | PP_4921/thiC | NCS1 family transporter/phosphomethylpyrimidine synthase | |||||
| * | ? | NC_002947 | = 4861197 | 76 (1.370) | 13 (0.290) | 9/220 | 3.9 | 18.6% | intergenic (‑103/+134) | ligA/PP_4275 | DNA ligase/cell division protein ZipA |
| ? | NC_002947 | = 4861238 | 52 (1.150) | intergenic (‑144/+93) | ligA/PP_4275 | DNA ligase/cell division protein ZipA | |||||
| * | ? | NC_002947 | = 1114899 | 49 (0.890) | 9 (0.200) | 9/220 | 3.9 | 21.5% | intergenic (‑88/+91) | rlmF/valS | ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase |
| ? | NC_002947 | = 1114925 | 26 (0.580) | intergenic (‑114/+65) | rlmF/valS | ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase | |||||
| * | ? | NC_002947 | 4675357 = | 49 (0.890) | 9 (0.200) | 9/224 | 4.0 | 19.0% | intergenic (+10/+94) | PP_4137/chrR | outer membrane siderophore receptor/chromate reductase |
| ? | NC_002947 | 4675415 = | 36 (0.790) | intergenic (+68/+36) | PP_4137/chrR | outer membrane siderophore receptor/chromate reductase | |||||
| * | ? | NC_002947 | = 5162643 | 61 (1.100) | 8 (0.180) | 8/218 | 4.2 | 14.4% | intergenic (+118/+83) | PP_4544/PP_4545 | hypothetical protein/beta‑ketodecanoyl‑ACP synthase |
| ? | NC_002947 | = 5162675 | 46 (1.030) | intergenic (+150/+51) | PP_4544/PP_4545 | hypothetical protein/beta‑ketodecanoyl‑ACP synthase | |||||