New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 109557	76 (1.450)	4 (0.080)	4/246	NT	5.2%	coding (748/1128 nt)	PP_0103	cytochrome c oxidase subunit 2
	?	NC_002947	= 109591	70 (1.330)					coding (782/1128 nt)	PP_0103	cytochrome c oxidase subunit 2

CCAGGCTTTGTCAACGAAGCCTGGACCCGGATCGAAAAGCCAGGCATCTACCGCGGCCAGTGCACCGAGCTGTGCGGCAAGGACCACGGCTTCATGCCGGTGGTGGTCGAGGTCAAGTCCAAGGCGGATTACGACACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/109419‑109557 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCTTGGCG‑GCTTCAGCCTTGCGCTCGCCAAGCCAGGTGTCGTAATCCGCCTTGGACTTGACCTCGACCACCACCGGCATGAAGCCGTGGTCCTTGCCGCACAGCTCGGTGCACTGGCCGCGGTAGATGCCT  <  NC_002947/109591‑109460                                                                                                                                                                                                                                                                                  CCAGGCTTTGTCAACGAAGCCTGGACCCGGATCGAAAAGCCAGGCATCTACCGCGGCCAGTGCACCGAGCTGTGCGGACTCAATCACGGCTTCATGCCGGTGGTGGTCGAGGTCAAGTCCCAGCCGGATGACGACACCTAGCTTGGCG‑GC                                                                                                                           >  1:247489/1‑150                                                                ACCGAGCTGTGCGGCAAGGACCACGGCTTCATGCCGGTGGTGGTCGAGGTCAAGTCCAAGGCGGATTACGACACCTAGCTTGGCG‑GCTTCAGCCTTGCGCTCGCCAAGCCAG                                                                                                  >  1:357447/1‑112                                                                ACCGAGCTGTGCGGCAAGGACCACGGCTTCATGCCGGTGGTGGTCGAGGTCAAGTCCAAGGCGGATTACGACACCTAGCTTGGCG‑GCTTCAGCCTTGCGCTCGCCAAGCCAG                                                                                                  <  2:357447/112‑1                                                                                                                          AGGCGGATTACGACACCTGGCTTGGCGAGCGCAAGGCTGAAGC‑CGCCAAGCTAGGTGTCGTAATCCGCCTTGGACTTGACCTCGACCACCACCGGCATGAAGCCGTGGTCCTTGCCGCACAGCTCGGTGCACTGGCCGCGGTAGATGCCT  >  2:247489/1‑150                                                                                                                                                                                                                                                                                  CCAGGCTTTGTCAACGAAGCCTGGACCCGGATCGAAAAGCCAGGCATCTACCGCGGCCAGTGCACCGAGCTGTGCGGCAAGGACCACGGCTTCATGCCGGTGGTGGTCGAGGTCAAGTCCAAGGCGGATTACGACACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/109419‑109557 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCTTGGCG‑GCTTCAGCCTTGCGCTCGCCAAGCCAGGTGTCGTAATCCGCCTTGGACTTGACCTCGACCACCACCGGCATGAAGCCGTGGTCCTTGCCGCACAGCTCGGTGCACTGGCCGCGGTAGATGCCT  <  NC_002947/109591‑109460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.