| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1908671 = | 57 (1.080) | 5 (0.100) | 4/232 | NT | 8.7% | coding (622/711 nt) | PP_1709 | fumarylacetoacetate hydrolase family protein |
| ? | NC_002947 | 1908701 = | 51 (1.030) | coding (592/711 nt) | PP_1709 | fumarylacetoacetate hydrolase family protein | |||||
GTCAATGGCCAGGAGCGCCAACGTGCACACCTCAGCCAGCAGACCTGGGCATTGGCTGAAGTGATCAGCAGGCTGTCTCGCCAACTGCCGCTGCGCCCGGGCGACCTGATCATGACCGGCAGCCCGCCCGGCGTGGCACCGCTGAACCCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1908824‑1908671‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggcgGGCTGCCGGTCATGATCAGGTCGCCCGGGCGCAGCGGCAGTTGGCGAGACAGCCTGCTGATCACTTCAGCCAATGCCCAGGTCTGCTGGCTGAGGTGTGCACGTTGGCGCTCCTGGCCATTGACCTGCAGCCATAGCGACGTATCCAGC > NC_002947/1908701‑1908849 GTCAATGGCCAGGAGCGCCAACGTGCACACCTCAGCCAGCAGACCTGGGCATTGGCTGAAGTGATCAGCAGGCTGTCTCGCCAACTGCCGCTGCGCCCGGGCGACCTGATCATGACCGGCAGCCCGCCCAGCGTGGCACCGCTGAACCCG < 2:655261/150‑1GTCAATGGCCAGGAGCGCCAACGTGCACACCTCAGCCAGCAGACCTGGGCATTGGCTGAAGTGATCAGCAGGCTGTCGCGCCAACTGCCGCCGCGCCCGGGCGACCTGATCATGACCGGCAGCCCGCCCGGCGTGGCACCGCTGAACCCG < 2:1280006/150‑1 CAATGGCCAGGAGCGCCAACGTGCACACCTCAGCCAGCAGACCTGGGCATTGGCTGAAGTGATCAGCAGGCTGTCTCGCCAACTTCCGCTGCGCCCGGGCGACCTGATCATGACCGGCAGCCCGCCCGGCGTGGCACCGCTGAACCCGGG < 2:26181/150‑1 AATGGCCAGGAGCGCCAACGTGCACACCTCAGCCAGCAGACCTGGGCATTGGCTGAAGTGATCAGCAGGCTGTCTCGCCAACTGCCGCTGCGCCCGGGCGACCTGATACAGATCGGCAGCCCGCCCGGCGTGGCACCGCTGAACCCGGGC > 1:14058/1‑150 GCCCGCCCGGCGTGGCACCGCTGAACCCGGGCGGGCTGCCGGTCATGATCAGGTCGCCCGGGCGCAGCGGCAGTTGGCGAGACAGCCTGCTGATCACTTCAGCCAATGCCCAG < 1:1068478/113‑1 GCCCGCCCGGCGTGGCACCGCTGAACCCGGGCGGGCTGCCGGTCATGATCAGGTCGCCCGGGCGCAGCGGCAGTTGGCGAGACAGCCTGCTGATCACTTCAGCCAATGCCCAG > 2:1068478/1‑113 ctCCCGGCGTGGCACCGCTGAACCCGGGCGGGCTGCCGGTCATGATCAGGTCGCCCGGGCGCAGCGGCAGTTGGCGAGACAGCCTGCTGATCACTTCAGCCAATGCCC > 2:20899/3‑108 CGCCCGGCGTGGCACCGCTGAACCCGGGCGGGCTGCCGGTCATGATCAGGTCGCCCGGGCGCAGCGGCAGTTGGCGAGACAGCCTGCTGATCACTTCAGCCAATGCCC < 1:20899/108‑1 CGGCGTGGCACCGCTGAACCCGGGCGGGCTGCCGGTCATGATCAGGTCGCCCGGGCGCAGCGGCAGTTGGCGAGACAGCCTGCTGATCACTTCAGCCAATGCCCAGGTCTGCTGGCTGAGGTGTGCACGTTGGCGCTCCTGGCCATTGAC > 2:949771/1‑150 CGGGCGGGCTGCCGGTCATGATCAGGTCGCCCGGGCGCAGCGGCAGTTGGCGAGACAGCCTGCTGATCACTTCAGCCAATGCCCAGGTCTGCTGGCTGAGGTGTGCACGTTGGCGCTCCTGGCCATTGACCTGCAGCCATAGCGACGTAT < 2:1238056/150‑1 CGGGCTGCCGGTCATGATCAGGTCGCCCGGGCGCAGCGGCAGTTGGCGAGACAGCCTGCTGATCACTTCAGCCAATGCCCAGGTCTGCTGGCTGAGGTGTGCACGTTGGCGCTCCTGGCCATTGACCTGCAGCCATAGCGACGTATCCAG < 1:232382/150‑1 GGGCTGCCGGTCATGATCAGGTCGCCCGGGCGCAGCGGCAGTTGGCGAGACAGCCTGCTGATCACTTCAGCCAATGCCCAGGTCTGCTGGCTGAGGTGTGCACGTTGGCGCTCCTGGCCATTGACCTGCAGCCATAGCGACGTATCCAGC > 2:1408754/1‑150 GTCAATGGCCAGGAGCGCCAACGTGCACACCTCAGCCAGCAGACCTGGGCATTGGCTGAAGTGATCAGCAGGCTGTCTCGCCAACTGCCGCTGCGCCCGGGCGACCTGATCATGACCGGCAGCCCGCCCGGCGTGGCACCGCTGAACCCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1908824‑1908671‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgggcgGGCTGCCGGTCATGATCAGGTCGCCCGGGCGCAGCGGCAGTTGGCGAGACAGCCTGCTGATCACTTCAGCCAATGCCCAGGTCTGCTGGCTGAGGTGTGCACGTTGGCGCTCCTGGCCATTGACCTGCAGCCATAGCGACGTATCCAGC > NC_002947/1908701‑1908849 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |