New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3246271	50 (0.950)	5 (0.100)	4/240	NT	9.2%	coding (483/879 nt)	PP_2841	site‑specific recombinase
	?	NC_002947	= 3246295	50 (0.980)					coding (507/879 nt)	PP_2841	site‑specific recombinase

GCGAGCTGATGGATGTGTGCGCCGCCGACCCGCGGCCACAGGGGGTACGTGATGCGGCGATCATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3246120‑3246271 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagCTGGTGGTTGCCCTTGCCCACCACCTGCAGGCTGCG  <  NC_002947/3246295‑3246260                                                                                                                                                                                              GCGAGCTGATGGATGTGTGCGCCGCCGACCCGCGGCCACAGGGGGTACGTGATGCGGCGATCATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGC                                        >  1:471126/1‑150   GAGCTGATGGATGTGTGCGCCGCCGACCCGCGGCCACAGGGGGTACGTGATGCGGCGATCATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAG                                      <  2:548671/150‑1                                 CGGCCACAGGGGGTACGTGATGCGGCGATCATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACCTCTAGGCGCGCAGCCTGCAGCTGGTGGTTGCCCTTGCCCACCACCTGCAG        <  2:555634/150‑1                                                                                CACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGCTGGTGGTTGCCCTTGCCCACCACCTGCAGGCTGCG  <  1:650616/109‑1                                                                                CACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGCTGGTGGTTGCCCTTGCCCACCACCTGCAGGCTGCG  >  2:650616/1‑109                                                                                                      ctGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGCTGGTGGTTGCCCTTGCCCACCACCT            <  1:997513/75‑1                                                                                                      ctGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAGCTGGTGGTTGCCCTTGCCCACCACCT            >  2:997513/3‑77                                                                                                                                                                                              GCGAGCTGATGGATGTGTGCGCCGCCGACCCGCGGCCACAGGGGGTACGTGATGCGGCGATCATTGCCTTGCTGTACGGCACCGGCATGCGCAAGTCGGAGTCGGTCGACATCGACCTCGACCAGGTCGACTTCGAGGCGCGCAGCCTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3246120‑3246271 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagCTGGTGGTTGCCCTTGCCCACCACCTGCAGGCTGCG  <  NC_002947/3246295‑3246260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.