New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3877527 =	53 (1.010)	3 (0.060)	3/234	NT	5.7%	coding (572/1242 nt)	PP_3425	RND family transporter MFP subunit
	?	NC_002947	3877546 =	48 (0.960)					coding (591/1242 nt)	PP_3425	RND family transporter MFP subunit

GCCCAGGTATACCGGAGTGCTCTGGCTACGCTGGCCTTCACGGGCCAGCTGGGTGTACTTGAGGTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCGGTGGACACCACGCTGGTCAGCGGGGTGACATCGGCGGTGACGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3877678‑3877527 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgtCACCCCGCTGACCAGCGT  >  NC_002947/3877546‑3877563                                                                                                                                                                            GCCCAGGTATACCGGAGTGCTCTGGCTACGCTGGCCTTCACGGGCCAGCTGGGTGTACTTGAGGTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCGGTGGACACCACGCTGGTCAGCGGGGTGACATCGGCGGTGACGAT                      <  1:1196902/150‑1 GCCCAGGTATACCGGAGTGCTCTGGCTACGCTGGCCTTCACGGGCCAGCTGGGTGTACTTGAGGTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCGGTGGACACCACGCTGGTCAGCGGGGTGACATCGGCGGTGACGAT                      >  1:695072/1‑150   CCAGGTATACCGGAGTGCTCTGGCTACGCTGGCCTTCACGGGCCAGCTGGGTGTACTTGAGGTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCGGTGGACACCACGCTGGTCAGCGGGGTGACATCGGCGGTGACGATGT                    >  1:622868/1‑150                     TCTGGCTACGCTGGCCTTCACGGGCCAGCTGGGTGTACTTGAGGTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCTGTGGACACCACGCTGGTCAGCGGGGTGACATCGTCACCGCCGATGTCACCCCGCTGACCAGCGT  <  1:581692/150‑1                              GCTGGCCTTCACGGGCCAGCTGGGTGTACTTGAGGTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCGGTGGACACCACGCTGGTCAGCGGGGTGACATCGTCACCGCCGATGTCACCCCGCTGACCAGC    >  1:262162/1‑139                              GCTGGCCTTCACGGGCCAGCTGGGTGTACTTGAGGTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCGGTGGACACCACGCTGGTCAGCGGGGTGACATCGTCACCGCCGATGTCACCCCGCTGACCAGC    <  2:262162/139‑1                                                                GTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCGGTGGACACCACGCTGGTCAGCGGGGTGACATCGGCGGTGACG                        <  1:886158/85‑1                                                                GTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCGGTGGACACCACGCTGGTCAGCGGGGTGACATCGGCGGTGACG                        >  2:886158/1‑85                                                                                                                                                                            GCCCAGGTATACCGGAGTGCTCTGGCTACGCTGGCCTTCACGGGCCAGCTGGGTGTACTTGAGGTACACGCGCTCGTCGGCGTCGAAATAGGCGTAGACCTTGTCGGTGGACACCACGCTGGTCAGCGGGGTGACATCGGCGGTGACGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3877678‑3877527 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgtCACCCCGCTGACCAGCGT  >  NC_002947/3877546‑3877563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.