New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4668856 =	53 (1.010)	5 (0.100)	5/240	NT	9.2%	coding (682/1533 nt)	nuoM	NADH‑quinone oxidoreductase subunit M
	?	NC_002947	4668888 =	47 (0.920)					coding (714/1533 nt)	nuoM	NADH‑quinone oxidoreductase subunit M

AGAGCGAAGCGCAGCAGGCCGTAGGCCGCGGTCTTCAGCAAGATACCCGCCAGGTCCACCGAGCCTGCGGTCGGTGCCTGGGCGTGAGCGTCAGGCAGCCAGGAGTGGAACGGCACCACTGGCAGCTTCACCGCGAAGGCGATGAAGAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4669007‑4668856 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAGTGGTGCCGTTCCACTCCTGGCTGCCTGACGCTCACGCCCAGGCACCGACCGCAGGCTCGGTGGACCTGGCGGGTATCTTGCTGAAGACCGCGGCCTACGGCCTGCTGCGCTTCGCTCTGCCG  >  NC_002947/4668888‑4669011                                                                                                                                                                                                                                                                                      AGAGCGAAGCGCAGCAGGCCGTAGGCCGCGGTCTTCAGCAAGATACCCGCCAGGTCCACCGAGCCTGCGGTCGGTGCCTGGGCGTGAGCGTCAGGCAGCCAGGAGTGGAACGGCACCACTGGCAGCTTCACCGCGAAGGCGATGAAGAAG                                                                                                                                <  2:1121107/150‑1                                                                                                                      ACTGGCAGCTTCACCGCGAAGGCGATGAAGAAGCCAGTGGTGCCGTTCCACTCCTGGCTGCCTGACGCTCACGCCCAGGCACCGACCGCAGGCTCGGTGGACCTGGCGGGTATCTTGCTGAAGACCGCGGCCTACGGCCTGC                   >  1:193004/1‑142                                                                                                                      ACTGGCAGCTTCACCGCGAAGGCGATGAAGAAGCCAGTGGTGCCGTTCCACTCCTGGCTGCCTGACGCTCACGCCCAGGCACCGACCGCAGGCTCGGTGGACCTGGCGGGTATCTTGCTGAAGACCGCGGCCTACGGCCTGC                   <  2:193004/142‑1                                                                                                                          GCAGCTTCACCGCGAAGGCGATGAAGAAGCCAGTGGTGCCGTTCCACTCCTGGCTGCCTGACGCTCACGCCCAGGCACCGACCGCAGGCTCGGTGGACCT                                                         <  1:1415912/100‑1                                                                                                                          GCAGCTTCACCGCGAAGGCGATGAAGAAGCCAGTGGTGCCGTTCCACTCCTGGCTGCCTGACGCTCACGCCCAGGCACCGACCGCAGGCTCGGTGGACCT                                                         >  2:1415912/1‑100                                                                                                                               TTCACCGCGAAGGCGATGAAGCTGCCAGTGGTGCCGTTCCACTCCTGGCTGCCTGACGCTCACGCCCAGGCACCGACCGCAGGCTCGGTGGACCTGGCGGGTATCTTGCTGAAGACCGCGGCCTACGGCCTGCTGAGCTTCGCTCTGCCG  >  1:652065/1‑150                                                                                                                                                                                                                                                                                      AGAGCGAAGCGCAGCAGGCCGTAGGCCGCGGTCTTCAGCAAGATACCCGCCAGGTCCACCGAGCCTGCGGTCGGTGCCTGGGCGTGAGCGTCAGGCAGCCAGGAGTGGAACGGCACCACTGGCAGCTTCACCGCGAAGGCGATGAAGAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4669007‑4668856 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccAGTGGTGCCGTTCCACTCCTGGCTGCCTGACGCTCACGCCCAGGCACCGACCGCAGGCTCGGTGGACCTGGCGGGTATCTTGCTGAAGACCGCGGCCTACGGCCTGCTGCGCTTCGCTCTGCCG  >  NC_002947/4668888‑4669011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.