| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,648,905 | (A)6→7 | intergenic (‑142/+154) | oprB‑II ← / ← PP_1446 | carbohydrate‑selective porin/TonB‑dependent receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,648,899 | 1 | . | A | 94.3% | 466.7 / 17.9 | 142 | intergenic (‑136/+160) | oprB‑II/PP_1446 | carbohydrate‑selective porin/TonB‑dependent receptor |
| Reads supporting (aligned to +/- strand): ref base . (3/5); new base A (68/65); total (71/71) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.93e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 150 total aligned reads displayed.
GCAGTTGGAACATGAGATAGCGCTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAG‑AAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGATC > NC_002947/1648751‑1649043 | cATGAGATAGCGCTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAG‑aaa‑a‑aaagaca > 2:1534210/1‑145 (MQ=255) tGAGATAGCGCTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACaaa > 1:3436695/1‑150 (MQ=255) tGAGATAGCGCTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACaaa < 1:3106117/150‑1 (MQ=255) tGAGATAGCGCTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAG‑aaa‑a‑aaa < 1:414003/144‑2 (MQ=255) tGAGATAGCGCTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAG‑aaa‑a‑aaa > 2:414003/1‑143 (MQ=255) gaTAGCGCTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTg > 2:3096584/1‑150 (MQ=255) aTAGCGCTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGt > 2:724771/1‑150 (MQ=255) gcgcTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGc < 1:2011142/150‑1 (MQ=255) cgcTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCa > 2:2341469/1‑150 (MQ=255) tATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCag‑ag > 2:3719095/1‑150 (MQ=255) tCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GAGGCGAGGGTATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGa > 1:2770398/1‑150 (MQ=255) tttGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGAttg > 1:1714635/1‑150 (MQ=255) ttGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGAttgt < 2:2926500/150‑1 (MQ=255) tGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGAttgtt < 2:2204329/150‑1 (MQ=255) tGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGAttgtt < 2:1714635/150‑1 (MQ=255) gATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATAGCATGAATGCGCTGGCCAAGGTGAG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGAttgttg < 2:132609/150‑1 (MQ=255) ttGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACaa > 1:2633516/1‑125 (MQ=255) ttGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACaa < 2:2633516/125‑1 (MQ=255) ttGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGaa < 1:2767001/150‑1 (MQ=255) ttGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGaa > 2:620464/1‑150 (MQ=255) gAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCCTTGCCTATGGGGTCAAGATTTTTCGATTAAGCGTTTCAGCTTGCG‑GCGGGGAGAATATCCGGGAAGTCATAAG‑AAA‑ACACGCCAAACAGTCGCAG‑ACGATTTTTGTTTAACg < 2:2770398/150‑1 (MQ=255) gAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACg > 1:3757750/1‑150 (MQ=255) aaaaaaCGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACggg < 2:478575/150‑1 (MQ=255) aaCGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAAc > 1:295357/1‑150 (MQ=255) aaGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAgtcgt > 1:2307727/1‑150 (MQ=255) aGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAG‑GAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCa < 1:3750106/150‑1 (MQ=255) gggcATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACGGTCGTCa < 2:468755/148‑1 (MQ=255) aTCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAgtcgtacacca > 2:1369192/1‑144 (MQ=255) gAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGCGGATATAGGGGAAGGTATAAGAAAA‑A‑AAGACAAAATGTCGCAG‑AGGATTGTTGTTGAACGTGGAACAGAAGTCAATAATCg > 1:1331479/1‑150 (MQ=255) gAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAG‑AAA‑A‑AAGACAAATTTTCGCAG‑AGGAttgtt > 1:1425757/1‑120 (MQ=255) gAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATAGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCg > 2:3046626/1‑150 (MQ=255) aaGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAG‑aaa‑a‑aaa < 1:730329/96‑2 (MQ=255) aGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAg < 1:2302605/150‑1 (MQ=255) gggcgggcCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAgg > 1:2224557/1‑150 (MQ=255) cgggcACCTCAATGGATATGGCGACAACATTGTTCGATGACGCAATT‑ATCCTGCGAGCTAGGAGGATATAGGGAAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAg < 2:1064515/150‑1 (MQ=255) gggcCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAgg > 2:451304/1‑150 (MQ=255) gcCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAAt < 1:845319/95‑1 (MQ=255) gcCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAAt > 2:845319/1‑95 (MQ=255) aaTGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGaac > 2:3398582/1‑148 (MQ=255) aaTGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGc < 1:3719095/150‑1 (MQ=255) aTGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCg > 1:2541180/1‑150 (MQ=255) tGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAACgg < 1:875822/150‑1 (MQ=255) tGGAGATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCgg < 1:714665/150‑1 (MQ=255) ggATATGGCGAAAAGATTGTTGGATGAAGCGTTTCAGCGTGCG‑GCGTGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCggg < 2:774259/150‑1 (MQ=255) tGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGAttgttgt > 1:2630366/1‑99 (MQ=255) tGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGAttgttgt < 2:2630366/99‑1 (MQ=255) tGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCa < 1:3079885/119‑1 (MQ=255) gCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGc < 2:1077883/140‑1 (MQ=255) gCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGc > 1:1077883/1‑140 (MQ=255) gCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCggg < 2:685956/143‑1 (MQ=255) gCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCggg > 1:685956/1‑143 (MQ=255) gACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGaa < 1:199292/99‑1 (MQ=255) gACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGaa > 2:199292/1‑99 (MQ=255) aGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCAc < 2:158106/142‑1 (MQ=255) aGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCAc > 1:158106/1‑142 (MQ=255) gATTGTTCGATGAAGCGTTTCAGCGTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATg < 2:371243/150‑1 (MQ=255) aTTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGAttgtt > 2:59353/1‑87 (MQ=255) aTTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGAttgtt < 1:59353/87‑1 (MQ=255) gTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGcc > 2:2584197/1‑150 (MQ=255) ttCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAG‑AAACA‑AAGCAAAATAGTCGCGGTAGGGTATTTGTT‑AACGAACAACAGGCTGCAGTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCg > 2:3365533/1‑150 (MQ=255) gATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGtt > 1:1363817/1‑150 (MQ=255) tGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTa > 2:1411564/1‑118 (MQ=255) tGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTa < 1:1411564/118‑1 (MQ=255) gAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAGGTGATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATGGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGcc < 1:1210351/150‑1 (MQ=255) aaGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAg > 2:1190296/1‑107 (MQ=255) aaGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAg < 1:1190296/107‑1 (MQ=255) aGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCt > 1:2000638/1‑150 (MQ=255) tttCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGa > 2:3081075/1‑66 (MQ=255) tCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATc < 2:2541180/150‑1 (MQ=255) aGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGt < 1:2341469/150‑1 (MQ=255) cTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTAt > 2:1517877/1‑150 (MQ=255) ttGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAgtcgt > 2:3758302/1‑84 (MQ=255) ttGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCcgc < 1:1668808/121‑1 (MQ=255) ttGCG‑GCGGGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCcgc > 2:1668808/1‑121 (MQ=255) gcggGGAGGATATAGGGGAAGTTCTCCGCAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCgg < 1:1897024/150‑1 (MQ=255) gcggGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGCTTTCGGTTTTTGCCCTACCATCGTATTCGCgg < 1:102560/150‑1 (MQ=255) gcggGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCgg < 1:827557/150‑1 (MQ=255) gcggGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCgg < 1:2346571/150‑1 (MQ=255) gcggGGAGGATATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCgg < 2:1363817/150‑1 (MQ=255) aggggAGAGTAGAGGGGAAGTTATAAGAAAA‑A‑AAGACGAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCggg < 2:1331479/149‑1 (MQ=255) ggaggaTATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGa > 2:3042666/1‑150 (MQ=255) gaggaTATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGaa > 1:1270146/1‑150 (MQ=255) gaTATAGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAAccc < 2:458440/150‑1 (MQ=255) taGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTc > 1:2036624/1‑150 (MQ=255) taGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTc > 1:1686719/1‑150 (MQ=255) aGGGGAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCgg > 1:1360495/1‑137 (MQ=255) ggggAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAAc < 1:1600103/142‑1 (MQ=255) ggggAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAAc > 2:1600103/1‑142 (MQ=255) gggAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCggg < 1:753455/92‑1 (MQ=255) gggAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCggg > 2:753455/1‑92 (MQ=255) gggAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCgg < 1:3625681/91‑1 (MQ=255) gggAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCgg > 2:3625681/1‑91 (MQ=255) gggAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTa > 1:2117840/1‑150 (MQ=255) ggAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTac > 2:1415247/1‑150 (MQ=255) ggAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTac > 2:3401793/1‑150 (MQ=255) ggAAGTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTac > 2:1201707/1‑150 (MQ=255) gTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGtt > 1:949476/1‑109 (MQ=255) gTTATAAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGtt < 2:949476/109‑1 (MQ=255) tataAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGAt < 2:2307727/150‑1 (MQ=255) ataAGAAAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGATc < 1:2597366/150‑1 (MQ=255) | GCAGTTGGAACATGAGATAGCGCTATCTTTTGATTATTGAAAAAAACGGCAAGCGCATCGAAGGGCGGGCCCCTCAATGGATATGGCGACAAGATTGTTCGATGAAGCGTTTCAGCTTGCG‑GCGGGGAGGATATAGGGGAAGTTATAAG‑AAA‑A‑AAGACAAATTGTCGCAG‑AGGATTGTTGTTGAACGGGCAACAGTCGTCATTAATCGAGGCAGGTGTAGGAGCGGGTTCACCCGCGAATGCGCCGGTTGCCCTACCATCGTATTCGCGGGTGAACCCGTTCCTACACCGATC > NC_002947/1648751‑1649043 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |