| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 6,098,944 | (CTTCAG)2→1 | coding (196‑201/867 nt) | PP_5350 ← | RpiR family transcriptional regulator |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 6098935 | 6098940 | 6 | 27 [0] | [0] 29 | PP_5350 | RpiR family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6098941 = | 0 (0.000) | 25 (0.570) | 23/256 | 1.1 | 100% | coding (204/867 nt) | PP_5350 | RpiR family transcriptional regulator |
| ? | NC_002947 | = 6098934 | 0 (0.000) | coding (211/867 nt) | PP_5350 | RpiR family transcriptional regulator | |||||
TCGGAACTGAAAGTGGCCGACCACGTGCTGCTCGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6099096‑6098941‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaagctgGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAGCACCTTGATCCGCAGGCG < NC_002947/6098934‑6098794 TCGGAACTGAAAGTGGCCGACCACGTGCTGCTCGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGATGTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTG > 2:1097000/1‑150 GAACTGAAAGTGGCCGACCACGTGCTGCTCGACCAGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAG > 2:129250/1‑150 CTGAAAGTGGCCGACCACGTGCTGCTCGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTG < 2:363315/150‑1 TGAAAGTGGCCGACCACGTGCTGCTCGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGAGCTTCCGGGCACTGAAGCTGG > 1:233791/1‑150 TGGCCGACCACGTGCTGCTCGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAA < 1:307983/150‑1 TGGCCGACCACGTGCTGCTCGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAA < 1:714211/150‑1 GACCACGTGCTGCTCGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCTACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTG < 2:1053297/150‑1 CCACGTGCTGCTCGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGC > 2:491121/1‑150 GTGCTGCTCGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTG > 1:114296/1‑132 GTGCTGCTCGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTG < 2:114296/132‑1 GCTGCTCGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGG < 1:885261/150‑1 GCTCGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGACTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCAGAAGCTGGCGCAAAGCCTGGCTGCCGGGGC < 2:665358/150‑1 TCGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCA < 2:727796/150‑1 CGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAG < 2:285859/150‑1 CCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTC > 2:707007/1‑150 CCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTC < 2:703693/150‑1 CGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCG < 1:707007/150‑1 GCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGACTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGTTTGGGCCAGCTTCTGT < 2:601852/150‑1 CCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGT < 1:491121/150‑1 GCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGAT > 1:920139/1‑150 GCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCC < 1:129250/150‑1 GCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGA > 2:366223/1‑150 CAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTA < 2:1145351/150‑1 CATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCAC > 2:310207/1‑150 GTGCGTTTCTGCCGGGCCATTGGCTGCTGGTGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTG > 1:765842/1‑150 CGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATG > 1:565206/1‑150 GCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCC > 2:464686/1‑135 GCTGCTCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCC < 1:464686/135‑1 TCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAGCAC > 1:872657/1‑150 TCGGGCTTCCAGGACCTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAGCAC > 1:677779/1‑150 CTGAAGCTGGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAGCACCTTGATCCGCAGGCG > 1:1042981/1‑150 TCGGAACTGAAAGTGGCCGACCACGTGCTGCTCGACCCGGCTGCCGTCATGCACAGCTCCATGGCCGATTTGGCGCACAGCGTGGGTATCAGTGAGCCGACCATCGTGCGTTTCTGCCGGGCCATTGGCTGCTCGGGCTTCCAGGACCTGAAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6099096‑6098941‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaagctgGCGCAAAGCCTGGCTGCCGGGGCCAGCTTCGGTCAGTTCGCCATCCACGAAGACGATTCGGTCGCCGACTACAGCCTGAAGATCTTCGACACCACCCTGCACACCCTGATGGAAGTGCGCGAGCACCTTGATCCGCAGGCG < NC_002947/6098934‑6098794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |