| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5201627 = | 6 (0.130) | 14 (0.410) | 9/200 | 2.7 | 64.6% | intergenic (‑65/‑115) | PP_4582/PP_4583 | membrane protein/putative Peptidase |
| ? | NC_002947 | 5201722 = | 11 (0.320) | intergenic (‑160/‑20) | PP_4582/PP_4583 | membrane protein/putative Peptidase | |||||
AGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCC > NC_002947/5201579‑5201870 | aGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAAt > 2:942737/1‑150 (MQ=255) cGGCCTCTTCGCGGGTCAACCCGCACCTACCTCCGTGCGATCCCTGTTGGAGCGGGGTTACCCCCGGAGAGGCCGGCCCAGGCAACTCACATGAAGAGCGCTTAAATGCCAACCAATGACCGACCGCCGATTGCCC‑AAACCGACCCgggc > 2:162524/1‑148 (MQ=255) GCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCAc < 1:471036‑M1/150‑1 (MQ=255) TTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGAGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATCCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCTACCGAcc < 2:580818‑M1/150‑1 (MQ=255) GCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGt < 1:847261‑M1/150‑1 (MQ=255) GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTAt < 1:425970‑M1/150‑1 (MQ=255) GGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCCAAGCCGACCAGGCCACCGACCCGTAt < 1:690578‑M1/150‑1 (MQ=255) TAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTc > 2:688297‑M1/1‑73 (MQ=255) TAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTc < 1:688297‑M1/73‑1 (MQ=255) acccgctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTgg > 1:811625‑M2/68‑150 (MQ=255) ACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTgg < 1:332391‑M1/150‑1 (MQ=255) CCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCt > 1:503407‑M1/1‑147 (MQ=255) CCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCt < 2:503407‑M1/147‑1 (MQ=255) CCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAACCGACCAAGCCACCGACCCGCATGCCTGGc < 2:103558‑M1/150‑1 (MQ=255) ccgctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAAc < 2:991981‑M2/39‑1 (MQ=255) ccgctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAAc > 1:991981‑M2/66‑104 (MQ=255) ccgctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGc < 2:792740‑M2/84‑1 (MQ=255) ccgctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGc > 1:792740‑M2/66‑149 (MQ=255) ccgctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCt > 1:784338‑M2/66‑150 (MQ=255) ccgctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCt > 2:667978‑M2/66‑150 (MQ=255) ccgctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCt > 2:982081‑M2/66‑150 (MQ=255) CCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCt < 1:1093509‑M1/150‑1 (MQ=255) CCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCt < 2:460809‑M1/150‑1 (MQ=255) ctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGcc < 2:334290‑M2/50‑1 (MQ=255) ctccaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGcc > 1:334290‑M2/63‑112 (MQ=255) caacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACa > 2:893016‑M2/60‑150 (MQ=255) ccTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAgcg < 2:425970/150‑1 (MQ=255) cagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAgcg < 1:667978‑M2/94‑1 (MQ=255) cTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAgcgc < 1:627300/150‑1 (MQ=255) cTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAgcgc > 2:627300/1‑150 (MQ=255) tGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGacac > 2:987389/1‑150 (MQ=255) gATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGcc > 2:672341/1‑97 (MQ=255) gATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGcc < 1:672341/97‑1 (MQ=255) gaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAg < 2:811625‑M2/107‑1 (MQ=255) gaggtaggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAg < 2:784338‑M2/107‑1 (MQ=255) ccTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACGGCGCGACACCCCCGAg < 2:332391/150‑1 (MQ=255) tGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGCCCCGTATGCCTTGCTGCACCAGCCCGACACCCCCGAgtt > 2:84274/1‑148 (MQ=255) tGTTGGAGAGGGTATACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGt > 2:629643/1‑150 (MQ=255) ggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTc > 1:633456‑M2/38‑150 (MQ=255) ggagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTc < 1:893016‑M2/113‑1 (MQ=255) gagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAg > 2:397052‑M2/37‑143 (MQ=255) gagcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAg < 1:397052‑M2/107‑1 (MQ=255) gcgggtttacccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCt > 1:519619‑M2/35‑150 (MQ=255) gtttacccgcaccaaggacggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTAcc > 2:844351‑M2/31‑150 (MQ=255) ccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGAccc > 2:788092‑M2/25‑97 (MQ=255) ccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGAccc < 1:788092‑M2/73‑1 (MQ=255) ccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAg > 2:729071‑M2/25‑150 (MQ=255) ccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAg > 2:798665‑M2/25‑150 (MQ=255) ccgcgaagaggccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAg > 1:622089‑M2/25‑150 (MQ=255) gccggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGc > 2:1074467‑M2/15‑150 (MQ=255) cggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAg > 1:82952‑M2/13‑119 (MQ=255) cggcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAg < 2:82952‑M2/107‑1 (MQ=255) gcacaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTAc > 1:525945‑M2/11‑150 (MQ=255) acaggcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACACCTACCa < 2:471036‑M2/142‑1 (MQ=255) gcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGATCAGGCCACCGACTCCAATGCCTGGCTGCAACAGCGCGTCACCCCCCAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGaa < 1:580818‑M2/146‑1 (MQ=255) gcaaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGaa < 1:982081‑M2/146‑1 (MQ=255) caaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAg < 1:798665‑M2/147‑1 (MQ=255) aaCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGc > 1:7837‑M2/3‑150 (MQ=255) aCTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGcc < 2:622089‑M2/149‑1 (MQ=255) | AGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCC‑AAGCCGACCAGGCCACCGACCCGTATGCCTGGCTGCAACAGCGCGACACCCCCGAGGTACTCGCTTACCTGCAAGCTGAAAACGCCTACCAGGAAGCC > NC_002947/5201579‑5201870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |