New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6000959 =	30 (0.970)	6 (0.250)	6/226	2.4	22.4%	intergenic (+10/+99)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase
	?	NC_002947	6001053 =	18 (0.740)					intergenic (+104/+5)	PP_5256/amaA	cyclic nucleotide‑binding protein/L‑pipecolate oxidase

CGCCTTCGCTGCGGACAGCGTTCTATGAGTCCGGTTTTTCGCTGTACCACGCGGGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6001137‑6000959 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaagaggccAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCAGGAA  >  NC_002947/6001053‑6001201                                                                                                                                                                                                                                                                                                                                          CGCCTTCGCTGCGGACAGCGTTCTATGAGTCCGGTTTTTCGCTGTACCACGCGGGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTACTACAGGTTCATCACAGCCCTCTCAGGCGGTGCACTACTT                                                                                                                                                                                    <  1:19253/150‑1     TTCGCTGCGGACAGCGTTCTATGAGTCCGGTTTTTCGCTGTACCACGCGGGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAG                                                                                                                                                                                <  1:99953/150‑1         CTGCGGACAGCGTTCTATGAGTCCGGTTTTTCGCTGTACCACGCGGGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGC                                                                                                                                                                            <  2:556859/150‑1         CTGCGGACAGCGTTCTATGAGTCCGGTTTTTCGCTGTACCACGCGGGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGC                                                                                                                                                                            >  2:2501/1‑150         CTGCGGACAGCGTTCTATGAGTCCGGTTTTTCGCTGTACCACGCGGGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGC                                                                                                                                                                            <  1:386435/150‑1            tccgCAGCGTTCTATGAGTCCGGTTTTTCGCTGTACCACGCGGGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGG                                                                                                                                                                         <  1:497059/146‑1                        TATGAGTCCGGTTTTTCGCTGTACCACGCGGGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAA                                                                                                                                                             <  1:2501/150‑1                              TCCGGTTTTTCGCTGTACCACGCGGGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCC                                                                                                                                                       >  1:137855/1‑150                              TCCGGTTTTTCGCTGTACCACGCGGGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCC                                                                                                                                                       >  1:424627/1‑150                                 GGTTTTTCGCTGTACCACGCGGGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCag                                                                                                                                                                          >  2:153461/1‑126                                 GGTTTTTCGCTGTACCACGCGGGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGG                                                                                                                                                                          <  1:153461/128‑1                                                                                                         CCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGC                                                                            >  1:563561/1‑150                                                                                                              CCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTC                                                                               <  1:201023/142‑1                                                                                                              CCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTC                                                                               >  2:201023/1‑142                                                                                                                     GTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAA                                                                      >  1:20761/1‑144                                                                                                                     GTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAA                                                                      <  2:20761/144‑1                                                                                                                      TTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGC                                                               <  2:563561/150‑1                                                                                                                                                        TAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAG                             >  1:645419/1‑150                                                                                                                                                                 GTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGC                    <  1:342426/150‑1                                                                                                                                                                       CCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCC              >  1:469094/1‑150                                                                                                                                                                       CCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCGGTCCGCCTCGCC              >  2:185207/1‑150                                                                                                                                                                        CGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCC             >  1:639466/1‑150                                                                                                                                                                               AGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCA      <  1:413838/150‑1                                                                                                                                                                                 GCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCAGG    >  1:483227/1‑150                                                                                                                                                                                  CCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCAGGA   >  1:502590/1‑150                                                                                                                                                                                   CAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCAGGAA  >  2:248736/1‑150                                                                                                                                                                                                                                                                                                                                          CGCCTTCGCTGCGGACAGCGTTCTATGAGTCCGGTTTTTCGCTGTACCACGCGGGGCAGTGCCTGAGGGTTGTGTTGTAAGTACTGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6001137‑6000959 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggtttacccgcgaagaggccAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGCGCGCTCACACCGCTCATCGGCGAAAACGGAATCGGCAGGCTGTCCGCCTCGCCCTTGAGCAGGAA  >  NC_002947/6001053‑6001201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.