New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1899243 =	41 (1.320)	9 (0.300)	7/278	2.7	20.3%	intergenic (+271/‑249)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	1899337 =	31 (1.030)					intergenic (+365/‑155)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase

CCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGC  >  NC_002947/1899188‑1899485                                                                                                                                                       |                                                                                                                                                     ccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCg                                                                                                                                                      >  2:99478/1‑150 (MQ=255) ccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCg                                                                                                                                                      <  1:588668/150‑1 (MQ=255) ccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGACGGCGCGCGCTCCCCCACAGGTACTTCTCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCg                                                                                                                                                      <  1:87250/150‑1 (MQ=38) ccAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCCCATGGTGAGTGCGATGGAGACAGCCT‑TTCGCGGGCACGCCCGCTCCCACAGGTACTCCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCg                                                                                                                                                      <  2:370311/150‑1 (MQ=25)      cgttgacagcccgggatgaggtcgatcagcaatttattggctagctataccGGCCTCTTCGCGGGCACGCCAAGGCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGtat                                                                                                                                                  >  1:47189‑M1/52‑150 (MQ=255)       aaGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAg                                                                                                                                                <  2:164301/150‑1 (MQ=255)             cTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCCTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTTGcc                                                                                                                                          >  1:149730/1‑150 (MQ=255)                          gTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCCTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGa                                                                                                                             >  1:501308/1‑150 (MQ=255)                               cACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTCCTGATCTaa                                                                                                                        >  2:179165/1‑149 (MQ=255)                                        gTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGc                                                                                                                                <  1:227773/133‑1 (MQ=255)                                        gTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGc                                                                                                                                >  2:227773/1‑133 (MQ=255)                                                  t‑gtgCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAAc                                                                                                     <  2:192363/150‑1 (MQ=255)                                                    ataccggccctttcgcgggcatgcccgctcccacagggatatcgcaaggcctgagggcggcgcagtacctgtgggccttggcgtgcccgcgaagaggccGGTATAGCTAGCCAATAAATTGCTGATCGACCTCATCCCGGGCTGTCAACg                                                                                                    >  1:47189‑M2/100‑150 (MQ=255)                                                          GCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACa                                                                                              <  1:173712‑M1/150‑1 (MQ=255)                                                                       cACGCCCCCACCCACAGGTCCTGCGCCGCCCTCAGGCCTTGCGATATACCTGTGGGCGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACtt                                                                                 <  2:149730/150‑1 (MQ=255)                                                                          gCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCAc                                                                              >  1:245368/1‑150 (MQ=255)                                                                            ccgctcccacagggatatcgcaaggcctgagggcggcgcagtacctgtgggagcgggcgtgcccgcgaaagggccGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGa                                                                            >  2:702092‑M2/76‑150 (MQ=255)                                                                            ccGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGCTATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACgc                                                                            >  2:279351/1‑149 (MQ=255)                                                                            ccGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGcc                                                                                           <  2:613679/135‑1 (MQ=255)                                                                            ccGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGcc                                                                                           >  1:613679/1‑135 (MQ=255)                                                                                  ccACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAgg                                                                      >  1:6016/1‑150 (MQ=255)                                                                                   cacagggatatcgcaaggcctgagggcggcgcagtacctgtgggagcgggcgtgcccgcgaagaggccGGTATAGCTGGCCCATAAATTGCTGa                                                                                                                             >  1:116961‑M2/69‑94 (MQ=255)                                                                                   cacagggatatcgcaaggcctgagggcggcgcagtacctgtgggagcgggcgtgcccgcgaagaggccGGTATAGCTGGCCCATAAATTGCTGa                                                                                                                             <  2:116961‑M2/26‑1 (MQ=255)                                                                                   cacagggatatcgcaaggcctgagggcggcgcagtacctgtgggagcgggcgtgcccgcgaagaggccGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGgc                                                                     >  2:470843‑M2/69‑150 (MQ=255)                                                                                   cacagggatatcgcaaggcctgagggcggcgcagtacctgtgggagcgggcatgcccgcgaaagggccGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCt                                                                                         <  1:413901‑M2/62‑1 (MQ=255)                                                                                   cacagggatatcgcaaggcctgagggcggcgcagtacctgtgggagcgggcatgcccgcgaaagggccGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCt                                                                                         >  2:413901‑M2/69‑130 (MQ=255)                                                                                        ggatatcgcaaggcctgagggcggcgcagtacctgtgggagcgggcgtgcccgcgaaagggccGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCgt                                                                <  1:702092‑M2/87‑1 (MQ=255)                                                                                        gTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGCAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCgt                                                                >  2:172532/1‑150 (MQ=255)                                                                                         tattGCGCCGCCCTCAGGCCTTGCGCTATTCCTATGGGGGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCgtg                                                               <  2:202108/147‑1 (MQ=255)                                                                                               gccgccCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGccc                                                         <  1:110475/150‑1 (MQ=255)                                                                                                     cTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTg                                                   >  1:517178/1‑150 (MQ=255)                                                                                                      tCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGc                                                  <  1:99478/150‑1 (MQ=255)                                                                                                              tGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGa                                                                                                >  1:238890/1‑96 (MQ=255)                                                                                                              tGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGa                                                                                                <  2:238890/96‑1 (MQ=255)                                                                                                                   tatCCCTGTGGGAGCGGGCATGACATCCAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCgg                                     <  1:179165/150‑1 (MQ=255)                                                                                                                   agtacctgtgggagcgggcgtgcccgcgaagaggccGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCgg                                     <  2:47189‑M2/114‑1 (MQ=255)                                                                                                                              gAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCAGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGgcg                          >  2:410059/1‑150 (MQ=255)                                                                                                                                      aTGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACATCATCCCACGCTGTCAACGTCGACAGTCCGCACCACGTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTg                  >  1:264271/1‑150 (MQ=255)                                                                                                                                         cccGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGt               >  2:377274/1‑150 (MQ=255)                                                                                                                                                aaGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCcac        <  1:285033/150‑1 (MQ=255)                                                                                                                                                  gggCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGgc                           <  2:21002/129‑1 (MQ=255)                                                                                                                                                  gggCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGgc                           >  1:21002/1‑129 (MQ=255)                                                                                                                                                      cGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGc  <  1:134547‑M2/149‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                     CCAGCAAAGCGCCTGGGAGCATGAGGTTGCCACCGCATGGTGCGTAACCT‑GTGCAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCCGCCCTCAGGCCTTGCGATATCCCTGTGGGAGCGGGCATGCCCGCGAAAGGGCCGGTATAGCTGGCCCATAAATTGCTGATCTACCTCATCCCGGGCTGTCAACGTCGACAGCCCTCACCACTTCACGACAAAGGCGCCGTGTTGCCCCGCTTGCATCAGCATGCCGGGGCAGCCGGCGCCTTTTTGCGTTTTCCACAGGAGC  >  NC_002947/1899188‑1899485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.