| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5382480 | 24 (0.570) | 10 (0.320) | 7/196 | 2.9 | 38.7% | intergenic (+52/+81) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR |
| ? | NC_002947 | = 5382508 | 14 (0.450) | intergenic (+80/+53) | smpB/pdhR | SsrA‑binding protein/DNA‑binding transcriptional regulator LldR | |||||
ACCTGATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5382301‑5382480‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctcttcgcgggcaagcccgctcccacaggaTAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGTTGGAATCGCGTTCGCGCAT < NC_002947/5382508‑5382363 ACCTGATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGC > 2:952345/1‑150ACCTGATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTACAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGC > 1:318798/1‑150 CCTGATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCC > 2:511118/1‑150 ATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTT > 2:150795/1‑150 ATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTT > 1:426979/1‑150 ccAGTGCGATTTCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCG > 2:672871/3‑150 GTGCGATTTCGCACTTGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCGAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGG < 2:724374/150‑1 GTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGG < 1:504541/150‑1 GTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTACAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGG < 2:318798/150‑1 TCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCTTGCCC > 1:906179/1‑150 TGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCC > 2:739474/1‑150 GGGCAAGGGCAAGAAGGAATTCGACAAGCGCGGCGCCATACGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCA < 2:773008/150‑1 GGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCTTGCCCGCgaaga < 2:906179/150‑6 GCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACA < 1:739474/150‑1 GCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACA < 1:511118/150‑1 GCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACA > 1:397066/1‑150 TTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTT > 1:363502/1‑150 TTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTT > 1:304067/1‑150 AAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCT > 1:744041/1‑150 CATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGG > 1:31870/1‑99 CATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGG < 2:31870/99‑1 GCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGT < 2:744041/150‑1 CGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTG < 2:304067/150‑1 CGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTG < 2:363502/150‑1 CGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCT > 2:558727/1‑129 CGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCT < 1:558727/129‑1 GAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGT < 1:890091/108‑1 GAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGT > 2:890091/1‑108 GCCTCTTCGCGGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCA > 1:373194/1‑150 GGGCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGTT > 1:78016/1‑150 GCAAGCCCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGTTGG > 2:426979/1‑150 CCGCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGTTGGAATCGC > 1:952345/1‑150 GCTCCCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGTTGGAATCGCGT < 2:373194/150‑1 CCACAGGATAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGTTGGAATCGCGTTCGC > 1:529776/1‑150 AGGATAGGCGCCGGGCTTGAATCTGATGCCATTCCTGTGTGAGCGTGCTTGCCCGCGAACAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCACACAGCCCGCTGCAGCTCGCGGTTGGAATCGCGTTCGCGCAT > 1:957994/1‑150 ACCTGATCAAGTGCGAAATCGCACTGGGCAAGGGCAAGAAGGAATTCGACAAGCGCGACACCATGCGCGAACGCGATTCCAACCGCGAGCTGCAGCGGGCTGTGCGGAACAAGGGCAAGGAAGAGTAACTACTCTTCAACCTGTTCCGGCCTCTTCGCGGGCAAGCCCGCTCCCACAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5382301‑5382480‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctcttcgcgggcaagcccgctcccacaggaTAGGCGCCGGGCTTGAATCTGGTGCCATTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGAACAGGTTGAAGAGTAGTTACTCTTCCTTGCCCTTGTTCCGCACAGCCCGCTGCAGCTCGCGGTTGGAATCGCGTTCGCGCAT < NC_002947/5382508‑5382363 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |