New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4896421	41 (0.980)	13 (0.320)	12/256	2.5	21.9%	intergenic (+9/‑199)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein
	?	NC_002947	= 4896512	53 (1.310)					intergenic (+100/‑108)	PP_4304/sbp‑I	VIC family cation transporter/sulfate ABC transporter substrate‑binding protein

TTTACCGCCGAGCTGGCCAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCG  >  NC_002947/4896278‑4896568                                                                                                                                                |                                                                                                                                                    tttACCGCCGAGCTGGCCAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCgg                                                                                                                                               >  2:163799/1‑150 (MQ=255)     ccgccgAGCTGGCCAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCctc                                                                                                                                           >  2:797569/1‑150 (MQ=255)        ccgAGCTGGCCAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTc                                                                                                                                        <  1:388779/150‑1 (MQ=255)            gCTGGCCAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGTCGGCCTCTTCGCgg                                                                                                                                    <  2:1046421/150‑1 (MQ=255)            gCTGGCCAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCACCTGCGCCGGCCTCTTCGCgg                                                                                                                                    <  2:948431/150‑1 (MQ=255)                gCCAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAGAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTaa                                                                                                                                >  1:828180/1‑150 (MQ=255)                       ccATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCt                                                                                                                         >  2:995248/1‑150 (MQ=255)                        cATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGtgccggcctcttcgcgggtaaacccgctc                                                                                                                        <  1:360270‑M1/150‑30 (MQ=255)                            cGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAc                                                                                                                    <  1:943243/150‑1 (MQ=255)                                  gAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGgcgc                                                                                                              >  1:317085/1‑150 (MQ=255)                                       gcTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGAcc                                                                                                         >  2:463697/1‑150 (MQ=255)                                        cTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCg                                                                                                        >  2:926944/1‑150 (MQ=255)                                            agcaTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGcgccggcctcttcgcgggtaaatccgctcctacgggggaccgcgcacgg                                                                                                    >  1:880300‑M1/1‑101 (MQ=255)                                              caTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGcgcg                                                                                                  <  1:995248/150‑1 (MQ=255)                                               aTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAc                                                                                                                    >  2:1009943/1‑131 (MQ=255)                                               aTGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTAc                                                                                                                    <  1:1009943/131‑1 (MQ=255)                                                tGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGt                                                                                                <  1:201743/150‑1 (MQ=255)                                                 gATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGtgccggcctcttcgcgggtaaacccgctcctacgggggaccgcgcacggtccgc                                                                                               >  1:753017‑M1/1‑96 (MQ=255)                                                        cGACCTGCCACAAGACGACCCACGAGCCGGGGTCGGCGCTCTGTTCTCTTTGGGTGAATGGGTGGTTTCCCAAATCGTGATAGCGCCTGcgccggcctcttcgcgggtaactccgctcctacgggggaccgcgcacggtccgcgcctgta                                                                                        <  2:1017873‑M1/150‑62 (MQ=255)                                                        cGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTTCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTa                                                                                        <  2:156737/150‑1 (MQ=255)                                                         ccgatctcacaagcagacCCACGAGCATTGGGCGGCGTTCTGTTCTCGCTGTGCGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGcgccggcctcttcgcgggtaaccccgctcctacgggggaccgcgcacggtccgcgcctgtag                                                                                       <  1:1005339‑M1/143‑63 (MQ=255)                                                             tGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGtgccggcctcttcgcgggtaaacccgctcctacgggggaccgcgcacggtccgcgcctgtaggagc                                                                                   <  2:753017‑M1/150‑67 (MQ=255)                                                             tGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGtgccggcctcttcgcgggtaaacccgctcctacgggggaccgcgcacggtccgcgcctgtaggagc                                                                                   <  2:908260‑M1/150‑67 (MQ=255)                                                               ccACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCgg                                                                                 <  1:926944/150‑1 (MQ=255)                                                                 acaAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGcgccggcctcttcgcgggtaaatccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggat                                                                               <  2:880300‑M1/150‑71 (MQ=255)                                                                 acaAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGcgccggcctcttcgcgggtaaacacgctcctccggaggaccgcgcacggtccgcgcctgtaggagatcgg                                                                               >  2:1005339‑M1/1‑80 (MQ=255)                                                                  caAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGcgccggcctcttcgcgggtaaacccgctaagacgggggaccgcgcacggtccgcgcctgtaggagcggatt                                                                              >  1:535629‑M1/1‑79 (MQ=255)                                                                   aagaagACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGttt                                                                             >  1:860585/1‑150 (MQ=255)                                                                    agaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTa                                                                            >  2:147659/1‑150 (MQ=255)                                                                    agaagaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTa                                                                            >  2:632123/1‑150 (MQ=255)                                                                     gaagaCCCACGAGAAGGGGGAGGCGTTATGTTCCGGTTTGGGGAATGTGGCGTTTCCCAAAGCGTGATAGCGCCTGcgccggcctcttcgcgggtaaacccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttac                                                                           <  2:535629‑M1/150‑75 (MQ=255)                                                                       agaCCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTAccc                                                                         <  2:912137/150‑1 (MQ=255)                                                                           ccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTAc                                                                           >  1:1016467/1‑144 (MQ=255)                                                                           ccACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTAc                                                                           <  2:1016467/144‑1 (MQ=255)                                                                                          ggcgTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCAcagg                                                      >  1:797569‑M2/1‑146 (MQ=255)                                                                                          ggcgTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATACGCTCCTACAGGCGCGGACCGCGCGCGGTCCCCCGTAGCAGCGAGTTTACCAGCGAAGACGCCGGCAcagg                                                      <  2:179092‑M2/150‑5 (MQ=255)                                                                                                ctgttctCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAg                                                <  2:860585/150‑1 (MQ=255)                                                                                                    tctcGCTGTGGGAATGGGTTGTTTCCCAGAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATa                                            <  2:828180/150‑1 (MQ=255)                                                                                                      tcGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAAc                                          >  1:192175/1‑150 (MQ=255)                                                                                                          tgtgGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCaaa                                      <  2:317085/150‑1 (MQ=255)                                                                                                              ggAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTgcgc                                                                                                   >  2:86709/1‑85 (MQ=255)                                                                                                              ggAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTgcgc                                                                                                   <  1:86709/85‑1 (MQ=255)                                                                                                                 aTGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCAtttt                               <  1:632123/150‑1 (MQ=255)                                                                                                                      ttgttTCCCAAAGCGTGATAGCGCCTGtgccggcctcttcgcgggtaaacccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcgg                                                                                 <  1:980770‑M1/95‑69 (MQ=255)                                                                                                                      ttgttTCCCAAAGCGTGATAGCGCCTGtgccggcctcttcgcgggtaaacccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcgg                                                                                 >  2:980770‑M1/1‑27 (MQ=255)                                                                                                                      tagttTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGAGCGCGGTCCGCCGTAGGGGCGGGTTTACCCGCGAAGAGGGGAGCACAGGCAGAAGCATAGCCGAAGCATTTTTTGtt                          >  1:419635/3‑150 (MQ=38)                                                                                                                       tgttTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTc                         <  1:163799/150‑1 (MQ=255)                                                                                                                         tttCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCtt                       <  1:463697/150‑1 (MQ=255)                                                                                                                             ccAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAAc                   <  1:147659/150‑1 (MQ=255)                                                                                                                              cAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAAcc                  >  1:757406/1‑150 (MQ=255)                                                                                                                                       aTAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGgcgc                                                                                                              <  2:1011069/49‑1 (MQ=255)                                                                                                                                       aTAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGgcgc                                                                                                              >  1:1011069/1‑49 (MQ=255)                                                                                                                                       aTAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGaa                                                                    <  2:434086/91‑1 (MQ=255)                                                                                                                                       aTAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGaa                                                                    >  1:434086/1‑91 (MQ=255)                                                                                                                                             ccTGtgccggcgtcttcgctggtaaactcgctgctacgggggaccgcgcgcggtccgcgcctgtaggagcgtatttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgcc   <  2:179092‑M1/150‑147 (MQ=255)                                                                                                                                             ccTGtgccggcctcttcgcgggtaaacccgctcctacgggggaccgcgcacggtccgcgcctgtaggagcggatttacccgcgaagaggccggcgcaggcgctatcacgctttgggaaacaacccattcccacagcgagaacagaacgcc   >  1:797569‑M1/1‑4 (MQ=255)                                                                                                                                              cTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCg  >  2:227174/1‑150 (MQ=255)                                                                                                                                              cTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGGTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATGTTTTGTTCTTTAACCCGTATCAACCCACCCg  >  2:133310/1‑150 (MQ=255)                                                                                                                                                |                                                                                                                                                    TTTACCGCCGAGCTGGCCAATGCCATGCGTGGGGAGCAGCTGCAGCATGATTGCCCGACCTGCCACAAGAAGACCCACGAGCAGGGGGCGGCGTTCTGTTCTCGCTGTGGGAATGGGTTGTTTCCCAAAGCGTGATAGCGCCTGCGCCGGCCTCTTCGCGGGTAAATCCGCTCCTACAGGCGCGGACCGTGCGCGGTCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAGAAGCATAACCAAAGCATTTTTTGTTCTTTAACCCGTATAAACCCACCCG  >  NC_002947/4896278‑4896568

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.