New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 228165	20 (0.630)	5 (0.160)	6/238	NT	18.8%	coding (991/2088 nt)	PP_0176	putative efflux transporter
	?	NC_002947	= 228187	24 (0.790)					coding (1013/2088 nt)	PP_0176	putative efflux transporter

GCAGATCGGCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/228059‑228165 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggGCGTGCTGCAGGGTGCAGCA‑GTCCTGCCACAGGTCGGCCCATTCGGTCAGGCGGTACAGGGCGTTGGACAACAGCAGCTCGGCGCGCTGGTCGAGGGCGGCTGTAGCGGGCTGCAGGCGGCCGATCTGC  <  NC_002947/228187‑228059                                                                                                                                                                                                                                               GCAGATCGGCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGGCGTGCTGCAGGGTGCAGCA‑GTCCTGCCA                                                                                                      <  2:494615/136‑1                                                                CAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGGCGTGCTGCAGGGTGCAGCA‑GTCCT                                                                                                          >  1:143689/1‑69                                                                CAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGGGCGTGCTGCAGGGTGCAGCA‑GTCCT                                                                                                          <  2:143689/69‑1                                                                                                ACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCCACAGGTCGGCCCATTCGGTCAGGCGGTACAGGGCGTTGGACAACAGCAGCTCGGCGCGCTGGTCGAGGGCGGCTGTAGCG                       <  1:428463/120‑1                                                                                                ACCTGTGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCCACAGGTCGGCCCATTCGGTCAGGCGGTACAGGGCGTTGGACAACAGCAGCTCGGCGCGCTGGTCGAGGGCGGCTGTAGCG                       >  2:428463/1‑120                                                                                                     TGGCAGGAC‑TGCTGCACCCTGCAGCACGCCCTGCCACAGGTCGGCCCATTCGGTCAGGCGGTACAGGGCGTTGGACAACAGCAGCTCGGCGCGCTGGTCGAGGGCGGCTGTAGCGGGCTGCAGGCGGCCGATCTGC  <  1:494615/136‑1                                                                                                                                                                                                                                               GCAGATCGGCCGCCTGCAGCCCGCTACAGCCGCCCTCGACCAGCGCGCCGAGCTGCTGTTGTCCAACGCCCTGTACCGCCTGACCGAATGGGCCGACCTGTGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/228059‑228165 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggGCGTGCTGCAGGGTGCAGCA‑GTCCTGCCACAGGTCGGCCCATTCGGTCAGGCGGTACAGGGCGTTGGACAACAGCAGCTCGGCGCGCTGGTCGAGGGCGGCTGTAGCGGGCTGCAGGCGGCCGATCTGC  <  NC_002947/228187‑228059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.