New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1432044 | 29 (0.920) | 4 (0.140) | 4/232 | NT | 12.1% | coding (117/1092 nt) | xenA | protein XenA |
? | NC_002947 | = 1432069 | 31 (1.050) | coding (142/1092 nt) | xenA | protein XenA |
AACAACAGTATTCAAATGAACCCGGAGTTTCCCATGTCCGCACTGTTCGAACCCTACACCCTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1431895‑1432044 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaccacCACGGGCCAGGCCGGCCAGGTGAACGTGGTGCCAGTCGTTGATCATGCCGTCTTCGGCCATGTACTGG < NC_002947/1432069‑1432002 AACAACAGTATTCAAATGAACCCGGAGTTTCCCATGTCCGCACTGTTCGAACCCTACACCCTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCAC < 1:764136/150‑1 TCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACCACGGGCCAGGCCGGCCAGGTGAACGTGGT < 1:645610/92‑1 TCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCACCACGGGCCAGGCCGGCCAGGTGAACGTGGT > 2:645610/1‑92 GGCCGAAGACGGCATGATCAACGACTGGCACCACCACGGGCCAGGCCGGCCAGGTGAACGTGGTGCCAGTCGTTGATCATGCCGTCTTCGGCCATGTACTGG > 1:559311/1‑102 GGCCGAAGACGGCATGATCAACGACTGGCACCACCACGGGCCAGGCCGGCCAGGTGAACGTGGTGCCAGTCGTTGATCATGCCGTCTTCGGCCATGTACTGG < 2:559311/102‑1 AACAACAGTATTCAAATGAACCCGGAGTTTCCCATGTCCGCACTGTTCGAACCCTACACCCTCAAAGACGTCACCCTGCGTAACCGTATCGCCATTCCGCCGATGTGCCAGTACATGGCCGAAGACGGCATGATCAACGACTGGCACCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1431895‑1432044 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaccacCACGGGCCAGGCCGGCCAGGTGAACGTGGTGCCAGTCGTTGATCATGCCGTCTTCGGCCATGTACTGG < NC_002947/1432069‑1432002 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |