| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1938589 | 20 (0.630) | 4 (0.130) | 3/238 | NT | 18.1% | coding (510/1299 nt) | PP_1738 | hypothetical protein |
| ? | NC_002947 | = 1938605 | 17 (0.560) | coding (494/1299 nt) | PP_1738 | hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CAGGTGGCTGACGAAGGCGGCGTCCAGCGCACCCAGGCTGTAACCGGTGAGGTAGAAATCACTGACCGGCAGGCGTGGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1938508‑1938589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgcAGGCCGTGCGCGCCCAGCATCCACGC < NC_002947/1938605‑1938580 CAGGTGGCTGACGAAGGCGGCGTCCAGCGCACCCAGGCTGTAACCGGTGAGGTAGAAATCACTGACCGGCAGGCGTGGATGCAGGCCGTGCGCGCCCAGCATCCACGC < 1:92007/108‑1CAGGTGGCTGACGAAGGCGGCGTCCAGCGCACCCAGGCTGTAACCGGTGAGGTAGAAATCACTGACCGGCAGGCGTGGATGCAGGCCGTGCGCGCCCAGCATCCACGC > 2:92007/1‑108 GCTGACGAAGGCGGCGTCCAGCGCACCCAGGCTGTAACCGGTGAGGTAGAAATCACTGACCGGCAGGCGTGGATGCAGGTCGTGCGCGCCCAGCATCCACGC > 1:602877/1‑102 GCTGACGAAGGCGGCGTCCAGCGCACCCAGGCTGTAACCGGTGAGGTAGAAATCACTGACCGGCAGGCGTGGATGCAGGTCGTGCGCGCCCAGCATCCACGC < 2:602877/102‑1 CAGGTGGCTGACGAAGGCGGCGTCCAGCGCACCCAGGCTGTAACCGGTGAGGTAGAAATCACTGACCGGCAGGCGTGGATGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1938508‑1938589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgcAGGCCGTGCGCGCCCAGCATCCACGC < NC_002947/1938605‑1938580 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |