New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3219398	38 (1.200)	3 (0.100)	3/230	NT	7.6%	intergenic (‑98/+80)	nfxB/PP_2821	HTH‑type transcriptional regulator NfxB/hypothetical protein
	?	NC_002947	= 3219419	38 (1.290)					intergenic (‑119/+59)	nfxB/PP_2821	HTH‑type transcriptional regulator NfxB/hypothetical protein

ACGACGATCGCGTCGGCCAGCGCTTTGAGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3219245‑3219398 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgcaggCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAATGCCCGCACGATATGCAGTGTGGAATCTTCTGATGCACCTCCCTACCGATGAGCGCCTGCT  <  NC_002947/3219419‑3219272                                                                                                                                                                                                                                                                                                                ACGACGATCGCGTCGGCCAGCGCTTTGAGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCG                                                                                                                                                          >  2:319671/1‑150                                        gCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGACCAAATTATGGCTCAATCAAGGCTCGCAGGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGA                                                                                                                   <  1:635277/149‑1                                                                                   CGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAG                                                                                                              >  1:249836/1‑112                                                                                   CGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTCATTGAG                                                                                                              <  2:249836/112‑1                                                                                                                                                    TCGCAGGGAAGCGCCTGCAGGGCTGCGAGGTGCTAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTTCCCTATGAGCCGTTTTCATTCACATTGCCCGCACGATATGCAGTGTGGACTCTTCTTATGCACCTCCCTACCGATGAGCGC       <  2:89480/150‑1                                                                                                                                                         GGCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAATGCCCGCACGATATGCAGTGTGGAATCTTCTGATGCACCTCCCTACCGATGAGCGCCTGCT  <  2:659025/150‑1                                                                                                                                                                                                                                                                                                                ACGACGATCGCGTCGGCCAGCGCTTTGAGCAGGCGCTCATCGGTAGGGAGGTGCATCAGAAGATTCCACACTGCATATCGTGCGGGCATTGTGAATGAAAACGGCTCATAGGGCACCCATTTGAGCAAATAATGGCTCAATCAAGGCTCGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3219245‑3219398 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgcaggCAAGCCCCTGCAGGGCTGCGACCTGCGAGCCTTGATTGAGCCATTATTTGCTCAAATGGGTGCCCTATGAGCCGTTTTCATTCACAATGCCCGCACGATATGCAGTGTGGAATCTTCTGATGCACCTCCCTACCGATGAGCGCCTGCT  <  NC_002947/3219419‑3219272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.