New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3930704 =	26 (0.820)	3 (0.100)	3/240	NT	12.7%	coding (448/1293 nt)	PP_5603	FAD dependent oxidoreductase
	?	NC_002947	3930745 =	16 (0.520)					coding (407/1293 nt)	PP_5603	FAD dependent oxidoreductase

GTGCTGACCGCTGATTTCCTGGTCGAGGCCCGAGGCCGTCAGGCACCCCTGGCCGCAGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3930764‑3930704 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACCACACTCACGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCG  >  NC_002947/3930745‑3930891                                                                                                                                                                                                                  GTGCTGACCGCTGATTTCCTGGTCGAGGCCCGAGGCCGTCAGGCACCCCTGGCCGCAGACCAGGAAATCAGCGGTCAGCACCT                                                                                                                               <  1:115686/83‑1 GTGCTGACCGCTGATTTCCTGGTCGAGGCCCGAGGCCGTCAGGCACCCCTGGCCGCAGACCAGGAAATCAGCGGTCAGCACCT                                                                                                                               >  2:115686/1‑83                TTCCTGGTCGAGGCCCGAGGCCGTCAGGCACCCCTGGCCGCAGACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACCACACTCACGCCTGCGCG                                             >  1:364967/1‑150                                                           ACCAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACCACACTCACGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCG  >  2:666590/1‑150                                                                                                                                                                                                                  GTGCTGACCGCTGATTTCCTGGTCGAGGCCCGAGGCCGTCAGGCACCCCTGGCCGCAGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3930764‑3930704 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaccAGGAAATCAGCGGTCAGCACCTGCCCATCGTCCAGGCGCACATGATGACCGCCCCCCTGCACGACCTCACGCACCCGCCCCTCGACCACACTCACGCCTGCGCGCTGAAGGTCTTCGCGCAGCGCTTGGTCAAAACGTTGCCGGTCG  >  NC_002947/3930745‑3930891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.