| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4754993 = | 32 (1.010) | 5 (0.170) | 3/234 | NT | 13.7% | coding (189/1965 nt) | pvdT | pyoverdine ABC transporter ATP‑binding protein/permease |
| ? | NC_002947 | 4755019 = | 33 (1.100) | coding (215/1965 nt) | pvdT | pyoverdine ABC transporter ATP‑binding protein/permease | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
AGATGGCTGGCATCTCGACGTTTTCCTGGGCTGAGCCGGAGGGGATCAGGTGGTAGCCCTGGAACACGAACCCGAAGGCCTCGCGGCGCAGCCAGGCCAGTTCGTCGCTGTCCAGCTCGGCAACGTCCTTGCCGGCGAAGCGGTAGCTGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4755147‑4754993‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggcaAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTCGTGTTCCAGGGCTACCACCTGATCCCCTCCGGCTCAGCCCAGGAAAACGTCGAGATGCCAG > NC_002947/4755019‑4755141 AGATGGCTGGCATCTCGACGTTTTCCTGGGCTGAGCCGGAGGGGATCAGGTGGTAGCCCTGGAACACGAACCCGAAGGCCTCGCGGCGCAGCCAGGCCAGTTCGTCGCTGTCCAGCTCGGCAACGTCCTTGCCGGCGAAGCGGTAGCTGC < 1:467658/150‑1 GATGGCTGGCATCTCGACGTTTTCCTGGGCTGAGCCGGAGGGGATCAGGTGGTAGCCCTGGAACACGAACCCGAAGGCCTCGCGGCGCAGCCAGGCCAGTTCGTCGCTGTCCAGCTCGGCAACGTCCTTGCCGGCGAAGCTGTAGCTGCC < 1:755793/150‑1 GCTGGCATCTCGACGTTTTCCTGGGCTGAGCCGGAGGGGATCAGGTGGTAGCCCTGGAACACGAACCCGAAGGCCTCGCGGCGCAGCCAGGCCAGTTCGTCGCTGTCCAGCTCGGCAACGTCCTTGCCGGCGAAGCGGTAGCTGCCGGCA > 1:64364/1‑150 TTGCCGGCGAAGCGGTAGCTGCCGGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTCGTGTTCCAGGGCTACCACCTGATCCCCTCCGGCTCAGCCCAGGAAACCGTCGAGCCGCCAG > 2:351032/1‑150 TTGCCGGCGAAGCGGTAGCTGCCGGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTCGTGTTCCAGG < 1:282432/99‑1 TTGCCGGCGAAGCGGTAGCTGCCGGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTCGTGTTCCAGG > 2:282432/1‑99 TTGCCGGCGAAGCGGTAGCTGCCGGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTC > 1:716985/1‑89 TTGCCGGCGAAGCGGTAGCTGCCGGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTC < 2:716985/89‑1 AGATGGCTGGCATCTCGACGTTTTCCTGGGCTGAGCCGGAGGGGATCAGGTGGTAGCCCTGGAACACGAACCCGAAGGCCTCGCGGCGCAGCCAGGCCAGTTCGTCGCTGTCCAGCTCGGCAACGTCCTTGCCGGCGAAGCGGTAGCTGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4755147‑4754993‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggcaAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTCGTGTTCCAGGGCTACCACCTGATCCCCTCCGGCTCAGCCCAGGAAAACGTCGAGATGCCAG > NC_002947/4755019‑4755141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |